View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2764_low_5 (Length: 404)
Name: NF2764_low_5
Description: NF2764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2764_low_5 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 80 - 387
Target Start/End: Complemental strand, 37896 - 37588
Alignment:
| Q |
80 |
attttgtccgacaagtgcaatctgagtttgaaatgaatcttgttggtgaattgacatattttcgtctgca-gtagagcaaatggaagatacaatctttat |
178 |
Q |
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| T |
37896 |
attttgtccgacaagtgcagtctgagtttgaaatgaatcttgttggtgaattgacatattttcgtctgcaagtagagcaaatggaagatacaatctttgt |
37797 |
T |
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| Q |
179 |
ctctcgaagcaagtatgctatgagcattatgtagaaggtgtatcttgaaaatgcaagtcataaaagaactccagttgcaacacatgttgagttaaccaaa |
278 |
Q |
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| T |
37796 |
ctctcaaagcaagtatgctatgagcattatgtagaaggtgtatcttgaaaatgtaagtcataaaagaactccagttgcaacatatgttgagttaaccaaa |
37697 |
T |
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| Q |
279 |
gataataatggtgtttatgttgatcaaggtttatacaggatcatgattggtagtttactatatcttataataagcaaacctgatgttacatttgttgtag |
378 |
Q |
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| T |
37696 |
gataataatggtgtttatgttgatcaaggtttatacaggatcatgattggtagtttactatatcttataataagcaaacctgatgttacatttgttgtag |
37597 |
T |
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| Q |
379 |
gagcttgtg |
387 |
Q |
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| T |
37596 |
gagcttgtg |
37588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 38002 - 37922
Alignment:
| Q |
1 |
gacaagaccttgtatgtgaagaatattgatggaggaacgatcatggtaactctaatttctattgatgac-atgtttatgga |
80 |
Q |
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| T |
38002 |
gacaagaccttgtatgtgaagaatgttgatggaggaaagatcatggtaactctaatttccattgatgacgatgtttatgga |
37922 |
T |
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