View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2765_low_5 (Length: 247)
Name: NF2765_low_5
Description: NF2765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2765_low_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 29113346 - 29113116
Alignment:
| Q |
17 |
caaattaaacatatgtaaactttcagtagtagaagattctcacctctaagaaggaaactttagttccaaattccaagagacaaaacaaggaaaaagaaat |
116 |
Q |
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| T |
29113346 |
caaattaaacatatgtaaactttcagtagtagaagattctcacctctaagaaggaaactttagttccaaattccaagagacaaaacaaggaaaaagaaat |
29113247 |
T |
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| Q |
117 |
cattagccacaacagaggggaatgaaataattaatgtattaaattgcagctaaataataaaacattcttaagtttatggtccaaaaatatgactaaattt |
216 |
Q |
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| T |
29113246 |
cattagccacaacagaggggaatgaaataattaatgtattaaattgcagctaaataataagacattcttaagtttatggtccaaaaatatgactaaattt |
29113147 |
T |
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| Q |
217 |
gaaatgccaaatcattagttttagcattgcc |
247 |
Q |
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| T |
29113146 |
gaaatgccaaatcattagttttagcattgcc |
29113116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 101 - 247
Target Start/End: Original strand, 33312637 - 33312776
Alignment:
| Q |
101 |
acaaggaaaaagaaatcattagccacaacagaggggaatgaaataattaatgtattaaattgcagctaaataataaaacattcttaagtttatggtccaa |
200 |
Q |
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|||||||||| |||||||||||||||| | |||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |
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| T |
33312637 |
acaaggaaaataaaatcattagccacaa--ggggggaaagaaataattaatgtattaacttgcagctaaataata-----ttcataagtttatggtccaa |
33312729 |
T |
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| Q |
201 |
aaatatgactaaatttgaaatgccaaatcattagttttagcattgcc |
247 |
Q |
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| T |
33312730 |
aagaatgactaaatttgaaatggcaaatcattagttttagctttgcc |
33312776 |
T |
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