View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_high_10 (Length: 514)
Name: NF2766_high_10
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 12 - 498
Target Start/End: Complemental strand, 50764997 - 50764511
Alignment:
| Q |
12 |
atgaattgataatgtttgtttagtnnnnnnnntcacaacagaacgtgtggatttcagagctaatttgagtctatcgtgcgcatgcacacgtgtagtagcc |
111 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764997 |
atgaattgataatgtttgtttagtaaaaaaaatcacaacagaacgtgtggatttcagagctaatttgagtctatcgtgcgcatgcacacgtgtagtagcc |
50764898 |
T |
|
| Q |
112 |
agtaggtctttgttttttaagcatgattgcatgaacgaatagaaggaaaatctgcacattggtgaataatttactgaacacaaaacaaccacagagaata |
211 |
Q |
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| T |
50764897 |
agtaggtctttgttttttaagcatgattgcatgaacgaatagaaggaaaatctgcacattggtgaataatttactgaacacaaaacaaccacagagaata |
50764798 |
T |
|
| Q |
212 |
aagctgcacgatgacataacagaagcagcaaccagttgcaactatggaaataagccaagaaacatttgacaataagctaagaatgaccaaagaaaaccct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764797 |
aagctgcacgatgacataacagaagcagcaaccagttgcaactatggaaataagccaagaaacatttgacaataagctaagaatgaccaaagaaaaccct |
50764698 |
T |
|
| Q |
312 |
aaatgaatcaaagtgatagaaaacaacttgataagcctctcaaattgcttcaccaacatctaatttgaagaaaacttttagcatggatctcattctgaat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764697 |
aaatgaatcaaagtgatagaaaacaacttgataagcctctcaaattgcttcaccaacatctaatttgaagaaaacttttagcatggatctcattctgaat |
50764598 |
T |
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| Q |
412 |
ttgtctaacatttgactatgaacctaaacttttgcaaaaagccccgaattacaactgattaaaaacattcatcctccacaaacatag |
498 |
Q |
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| T |
50764597 |
ttgtctaacatttgactatgaacctaaacttttgcaaaaagccccgaattacaactgattaaaaacattcatcctccacaaacatag |
50764511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 347 - 498
Target Start/End: Complemental strand, 35153576 - 35153414
Alignment:
| Q |
347 |
cctctcaaattgcttcaccaa---catctaatttgaagaaaacttttagcatggatctcattctgaatttgtctaacatttgact---atgaacctaaac |
440 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||| |||| ||||||| | || |
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| T |
35153576 |
cctctcaaattgcttcaccaataacatcttatttgaagaaaactttaagcatgg-tctcattctgaatttgtccaacatgagactatgatgaaccaagac |
35153478 |
T |
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| Q |
441 |
tt------ttgcaaaaagccccgaattacaactgattaaaaacattcatcctccacaaacatag |
498 |
Q |
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|| ||| | ||| |||||||| ||||| ||| |||||||||||||||||||||||||| |
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| T |
35153477 |
ttatgaagttgagagaagtcccgaattgcaactaattcaaaacattcatcctccacaaacatag |
35153414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 457 - 498
Target Start/End: Original strand, 35100847 - 35100888
Alignment:
| Q |
457 |
gaattacaactgattaaaaacattcatcctccacaaacatag |
498 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35100847 |
gaattacaactgattaaaaacattcatcctccacaaatatag |
35100888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 457 - 498
Target Start/End: Original strand, 35040556 - 35040597
Alignment:
| Q |
457 |
gaattacaactgattaaaaacattcatcctccacaaacatag |
498 |
Q |
| |
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|||||||||||||||||| |||||||||||| |||||||||| |
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| T |
35040556 |
gaattacaactgattaaatacattcatcctctacaaacatag |
35040597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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