View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_high_13 (Length: 503)
Name: NF2766_high_13
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 492
Target Start/End: Complemental strand, 32907882 - 32907404
Alignment:
| Q |
16 |
caataaggaatttcaatattttggcattttccttgtctttctgcaatgtttttcctcaaaacttgtattgatcccttttctgctatatcctgctaaatta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32907882 |
caataaggaatttcaatattttggcattttccttgtctttctgcaatgtttttcctcaaaacttgtattgatcccttttctgctatatcctgctaaatta |
32907783 |
T |
|
| Q |
116 |
cagcagatactaaagttaaaagtnnnnnnntaatatttaannnnnnnnggaaagaatgacagaatgaaagagagagag--tgataatatgtgattgaagt |
213 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32907782 |
cagcagatactaaagttaaaagtaaaaaaataatatttaattttttttggaaagaatgacagaatgaaagagagagagagtgataatatgtgattgaagt |
32907683 |
T |
|
| Q |
214 |
ctgaagagaattcannnnnnngagattgaatacacaaaaagtccaagaaagtctgaagtgtagcataaaacagccccaacagaaagttnnnnnnnncagc |
313 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32907682 |
ctgaagagaattcatttttttgagattgaatacacaaaaagtccaagaaagtctgaagtgtagcataaaacagccccaacagaaagttaaaaaaaacagc |
32907583 |
T |
|
| Q |
314 |
tttagaggacactcnnnnnnnccaacatacaaaacctctttgattatgaaatcttttgggtatctttggttaacaaaggtgaataaatgttgtaattgta |
413 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32907582 |
tttagaggacactctttttttccaacatacaaaacctctttgattatgaaatcttttgggtatctttggttaacaaagatgaataaatgttgtaattgta |
32907483 |
T |
|
| Q |
414 |
ccatcaacaaagacaagagaaattacagacctctgcttgttcactgcagtttgaagtggttgcccacttctttgtctct |
492 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32907482 |
ccatcaacaaagacaagagaaattacagacctctgcttgttcactgcagtttgaagtggttgcccacttctttgtctct |
32907404 |
T |
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