View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_high_20 (Length: 437)
Name: NF2766_high_20
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 251 - 420
Target Start/End: Original strand, 48816062 - 48816231
Alignment:
| Q |
251 |
taattatgagatcacttacacttacatataattatctatataaaacatttagtaaacatggagtaacaaataaacaaaactaaatacttacagcaggctt |
350 |
Q |
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| T |
48816062 |
taattgtgagatcacttacacttacgtataattatctatataaaacatttagtaaacatggagtaacaaataaacaaaactaaatacttacagcaggctt |
48816161 |
T |
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| Q |
351 |
gatagaaccacttgctttgaactcccaatctaaaacattgtcgtagtttcccacggtgactactgttctt |
420 |
Q |
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| T |
48816162 |
gatagaaccacttgctttgaactcccaatctaaaacattgtcgtagtttcccacggtgactactgttctt |
48816231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 48815795 - 48816029
Alignment:
| Q |
16 |
atatctagatccttgccttaagaaaatccagaaataccaagagacaggatacataattacacacggtactttagtgacccgcttggtaaactccctcgaa |
115 |
Q |
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| T |
48815795 |
atatctagatccttgccttaagaaaatccaaaaataccaagagacaagatatataattgcacagtgt--tttagtgacccgcttggtaaattccctcgaa |
48815892 |
T |
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| Q |
116 |
gattgggaatgaaatgaacgtgtttatgaagaaccatatcttatcttccaatcttttcnnnnnnntaaaatcttatcttccagtaacacactacgaa-tt |
214 |
Q |
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| T |
48815893 |
gattggaaatgaaatgaacgtgtttatgaagaaccatatcttatc------tcttttcaaaaaaagaaaatcttatcttccagtaacactctacgaattt |
48815986 |
T |
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| Q |
215 |
ttttatatgtattattttattacaaaatctgttttgtaattat |
257 |
Q |
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| T |
48815987 |
ttttatatgtattattttattacaaaatctgttttgtaattat |
48816029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 15825361 - 15825449
Alignment:
| Q |
331 |
taaatacttacagcaggcttgatagaaccacttgctttgaactcccaatctaaaacattgtcgtagtttcccacggtgactactgttct |
419 |
Q |
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| T |
15825361 |
taaatacttacagagggcttgatggaaccacttgttttgaactcccaatctaaaacattgtcatagtttccaacagtgactacggttct |
15825449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 419
Target Start/End: Original strand, 48789840 - 48789910
Alignment:
| Q |
349 |
ttgatagaaccacttgctttgaactcccaatctaaaacattgtcgtagtttcccacggtgactactgttct |
419 |
Q |
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| T |
48789840 |
ttgatggaaccacttgttttgaactcccaatctaaaacattgtcatagtttcctaccgtgactacagttct |
48789910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 420
Target Start/End: Original strand, 48807523 - 48807653
Alignment:
| Q |
288 |
atataaaacatttagtaaacatggagtaacaaataaacaaaactaaatacttacagcaggcttgatagaaccacttgctttgaactcccaatctaaaaca |
387 |
Q |
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| T |
48807523 |
atataaaacaattagtaaacctagaaaaacaaataaataaa-ctaaata-ttacggagggctttatcgaaccacttgttttgaactcccattctaaaata |
48807620 |
T |
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| Q |
388 |
ttgtcgtagtttcccacggtgactactgttctt |
420 |
Q |
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| T |
48807621 |
ttgtcatattttcctgcggtgactactgttctt |
48807653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 48804467 - 48804535
Alignment:
| Q |
88 |
agtgacccgcttggtaaactccctcgaagattgggaatgaaatgaacgtgtttatgaagaaccatatctt |
157 |
Q |
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| T |
48804467 |
agtggcccgcttggtaaactccctcgcggattggggatgaaat-cacatgtttatgaagaaccatatctt |
48804535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 48806145 - 48806181
Alignment:
| Q |
213 |
ttttttatatgtattattttattacaaaatctgtttt |
249 |
Q |
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| T |
48806145 |
ttttttatatgcattattttattacaaaatctgtttt |
48806181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 382
Target Start/End: Complemental strand, 48834385 - 48834349
Alignment:
| Q |
346 |
ggcttgatagaaccacttgctttgaactcccaatcta |
382 |
Q |
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| T |
48834385 |
ggcttgatggaaccacttgctttgaactcccaatcta |
48834349 |
T |
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