View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_high_23 (Length: 412)
Name: NF2766_high_23
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 14 - 396
Target Start/End: Original strand, 2529688 - 2530070
Alignment:
| Q |
14 |
aacctgtggaaagaagaacattaccagaatgtgattcaatttcgaggacataggtgaaattgttagaatcaggttcactgataagtttcattcctttggt |
113 |
Q |
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| T |
2529688 |
aacctgtggaaagaagaacattaccagaatgtgattcaatttcgaggacataggtgaaattgttagaatcaggttcactgataagtttcattcctttggt |
2529787 |
T |
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| Q |
114 |
gaatttttgcattggtaataatgtatcggttggatgatcaaaactttgccaaatcacattactatcatttccaagcaaaactaaatttccattgtcttgt |
213 |
Q |
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| T |
2529788 |
gaatttttgcattggtaataatgtatctgttggatgatcaaaactttgccaaatcacattactatcatttccaagcaaaactaaatttccattgtcttgt |
2529887 |
T |
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| Q |
214 |
aattccattgaagaaactttcatgccacttgtctttgttgaccaaactgaannnnnnnnnnnnngtaaaaaagcattaccctcttcatcaaacacaaact |
313 |
Q |
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| T |
2529888 |
aattccattgaagaaactttcatgccacttgtatttgttgaccaaactgaattttttcctttttgtaaaaaagcattaccctcttcatcaaacacaaact |
2529987 |
T |
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| Q |
314 |
tatcagaattagaaacaggagattctctatttgcagtccaaacaacttttgtgctatccatgtggactattgcaagtagaaac |
396 |
Q |
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| T |
2529988 |
tatcagaattagaaacaggagattctctatttgcagtccaaacaacttttgtgctatccatgtggactattgcaagtagaaac |
2530070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 355
Target Start/End: Complemental strand, 49462370 - 49462293
Alignment:
| Q |
278 |
gtaaaaaagcattaccctcttcatcaaacacaaacttatcagaattagaaacaggagattctctatttgcagtccaaa |
355 |
Q |
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| T |
49462370 |
gtaaaaaagcattaccctttttatcaaagacaaaattatcagaattagaaactggttttcctctattagcagtccaaa |
49462293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 31027494 - 31027455
Alignment:
| Q |
184 |
ccaagcaaaactaaatttccattgtcttgtaattccattg |
223 |
Q |
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| T |
31027494 |
ccaagcaaaaccaaatttccattgtcttgcaattccattg |
31027455 |
T |
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