View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_high_38 (Length: 291)
Name: NF2766_high_38
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 140 - 280
Target Start/End: Complemental strand, 52671384 - 52671244
Alignment:
| Q |
140 |
actacaaagagatggaaatggcttgagtacattcggtacgtcaacatataagagtatgaagaaatgtactcttaactacaaaccatagacatgcggtggg |
239 |
Q |
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| T |
52671384 |
actacaaagagatggaaatggcttgagtacattcggtacgtcaacatataagagtatgcagaaatgtactcttaactacaaaccatagacatgcggtggg |
52671285 |
T |
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| Q |
240 |
caaaaatgtatatattttatatctaatcgtttatgatgatg |
280 |
Q |
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| T |
52671284 |
caaaaatgtatatattttatatctaatcgtttatgaagatg |
52671244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 52671570 - 52671461
Alignment:
| Q |
18 |
aataacaactttatttatttgggttgtaaagacaagttttctattcttatataatgtagacaagttcttaattttgaccttacataaactatcaatttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52671570 |
aataacaactttatttatttgggttgtaaagacaagttttctattcttatataatgtagacaagttcttaattttgaccttacataaactatcaatttgt |
52671471 |
T |
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| Q |
118 |
ttcatgtagt |
127 |
Q |
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| T |
52671470 |
ttcatgtagt |
52671461 |
T |
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