View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_high_4 (Length: 598)
Name: NF2766_high_4
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 20 - 588
Target Start/End: Complemental strand, 12736833 - 12736265
Alignment:
| Q |
20 |
actatgacgctggtgacaatgtaaaattcaatttcccaatggcatatacaaccaccatgctggcttggagtgtggtggaatttggagaactcatggatcc |
119 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12736833 |
actatgatgctggtgacaatgtaaaattcaatttcccaatggcatatacaaccaccatgctggcttggagtgtggtggaatttggagaactcatgggtcc |
12736734 |
T |
|
| Q |
120 |
ggatttgcaacatgcattggaagcaattcgttggggaactgattatttcctcaaagcaacaaaaagatcaaatattgttgtagcacaagttggcgatccc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12736733 |
ggatttgcaacatgcattggaagcaattcgttggggaactgattatttcctcaaagcaacaaaaagaccaaatattgttgtagcacaagttggcgatccc |
12736634 |
T |
|
| Q |
220 |
attagtgatcatgattgttgggaaaggccagaagacatggacacttctaggacaacctattatttgtccgcgacgagacctggttcggaggtttcagccg |
319 |
Q |
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| T |
12736633 |
attagtgaccatgattgttgggaaagaccagaagacatggacacttctaggacaacctattatttgtccgcgacaagacctggttcggaggtttcagccg |
12736534 |
T |
|
| Q |
320 |
agattgcagccgggcttgcggcatcatccattgcattcagaaacattgatcctggatattctagtattcttcttgctagggctaaacgggtatacattta |
419 |
Q |
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|||||||||||| ||||||||| ||||||||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12736533 |
agattgcagccgcgcttgcggcgtcatccattgctttcagaaacattaatcgtggatattctaggattcttcttgctagggctaaacgggtatacattta |
12736434 |
T |
|
| Q |
420 |
tttaattatgtcttataattttnnnnnnntattaatggtagcaatttatttccattgctgatattttatttctcaaattgcaactaattattatatctct |
519 |
Q |
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| T |
12736433 |
tttaattatgtcaaagaaagtaactttctcaaatttggtagcaatttatttccattgctgatattttatttctcaaattgcaactaattattatatctct |
12736334 |
T |
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| Q |
520 |
ataataatatttaggtatttgactttgcaaattatcaccgtgggtcttacaataattccacaggttctg |
588 |
Q |
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| T |
12736333 |
ataataatatttaggtatttgactttgcaaattatcaccgtgggtcttacaataatgccataggttctg |
12736265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 425
Target Start/End: Complemental strand, 12766124 - 12765719
Alignment:
| Q |
20 |
actatgacgctggtgacaatgtaaaattcaatttcccaatggcatatacaaccaccatgctggcttggagtgtggtggaatttggagaactcatggatcc |
119 |
Q |
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||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12766124 |
actatgatgccggtgacaatgtaaaattcaatttccctatggcatatacaaccaccatgctggcttggagtgtggtggaatttggagaactcatgggtcc |
12766025 |
T |
|
| Q |
120 |
ggatttgcaacatgcattggaagcaattcgttggggaactgattatttcctcaaagcaacaaaaagatcaaatattgttgtagcacaagttggcgatccc |
219 |
Q |
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|||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||| || ||||||||||||| |||||||||||| | || |
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| T |
12766024 |
ggatttgcaacatgcattagaatcaatccgttggggaactgattatttcctcaaagccacaacaaagccaaatattgttgttgcacaagttggcaaccct |
12765925 |
T |
|
| Q |
220 |
attagtgatcatgattgttgggaaaggccagaagacatggacacttctaggacaacctattatttgtccgcgacgagacctggttcggaggtttcagccg |
319 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||| | || || ||||||||||||||||||| |
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| T |
12765924 |
attagtgaccatgattgttgggaaagaccagaagacatggacacttctagaacaacctattatgtgtccgaaaataggccaggttcggaggtttcagccg |
12765825 |
T |
|
| Q |
320 |
agattgcagccgggcttgcggcatcatccattgcattcagaaacattgatcctggatattctagtattcttcttgctagggctaaacgggtatacattta |
419 |
Q |
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||||||| |||| |||||||| |||||||||||||| ||||| |||||| | |||||||| | | ||||||||||||||||||| |||||| ||||| |
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| T |
12765824 |
agattgcggccgcacttgcggcgtcatccattgcatttagaaaaattgatgatcaatattctaatgtccttcttgctagggctaaacaggtatatattta |
12765725 |
T |
|
| Q |
420 |
tttaat |
425 |
Q |
| |
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|||||| |
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| T |
12765724 |
tttaat |
12765719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 12797146 - 12797102
Alignment:
| Q |
20 |
actatgacgctggtgacaatgtaaaattcaatttcccaatggcat |
64 |
Q |
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||||||| |||||||||||||| ||||||||||| |||||||||| |
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| T |
12797146 |
actatgatgctggtgacaatgtgaaattcaattttccaatggcat |
12797102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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