View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2766_high_44 (Length: 264)
Name: NF2766_high_44
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 19631977 - 19631720
Alignment:
| Q |
1 |
aagttttagggctagttcctaatgatgcccaacaagttacggaatttttgaatgaatcctggtctaacatggctcaaaatgatgagagtgttgatttggg |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19631977 |
aagttttaaggctagttcctaatgatgcccaataagttacggaatttttgagtgaatcctggtctaacatggctcaaaattatgagagtgttgatttggg |
19631878 |
T |
|
| Q |
101 |
tggaaatacaaatcaaccatttcaactggtggttccgagaaagtcaaaaagaaggttaaagaagcagcaaaccgaggctaacaaaggattcaaggtaggt |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19631877 |
tggaaacacaaatcaaccatttcaactggtggttccgagaaagtcaaaaagaaggttaaagaagcagcaaaccgaggctaacaaaggattcaaggtaggt |
19631778 |
T |
|
| Q |
201 |
gcttcgaactgtaccccgcgctagctcgttggtctgttgttgttccttatgcttttat |
258 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
19631777 |
gcttcgaaccgtaccccgcgctagcttgttggtctattgttgttccttatgcttttat |
19631720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 35599032 - 35599289
Alignment:
| Q |
1 |
aagttttagggctagttcctaatgatgcccaacaagttacggaatttttgaatgaatcctggtctaacatggctcaaaatgatgagagtgttgatttggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35599032 |
aagttttagggctagttcctaatgatgcccaacaagttacagaatttttgagtgaatcccggtctaacatggctcaaaatgatgagagtgttgatttggg |
35599131 |
T |
|
| Q |
101 |
tggaaatacaaatcaaccatttcaactggtggttccgagaaagtcaaaaagaaggttaaagaagcagcaaaccgaggctaacaaaggattcaaggtaggt |
200 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
35599132 |
tggaaacacaaatcaaccatttcaaccggtggttccgagaaagtcaaagagaaggttaaagaagcagcaaaccgaggctaacaaaggattcaagataggt |
35599231 |
T |
|
| Q |
201 |
gcttcgaactgtaccccgcgctagctcgttggtctgttgttgttccttatgcttttat |
258 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35599232 |
gcttcgaactgtaccccacgctagctcgttggtctattgttgttccttatgcttttat |
35599289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 5430720 - 5430836
Alignment:
| Q |
1 |
aagttttagggctagttcctaatgatgcccaacaagttacggaatttttgaatgaatcctggtctaacatggctcaaaatgatgagagtgttgatttggg |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||| | ||||| ||| |||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
5430720 |
aagttctagggctagttcctaatgatgccgaacaagttacag----tttgagtgattcctggtctag-atggctcaaaatgataagagtgttgatttggt |
5430814 |
T |
|
| Q |
101 |
tggaaatacaaatcaaccattt |
122 |
Q |
| |
|
|| ||| ||||||||||||||| |
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|
| T |
5430815 |
tgaaaacacaaatcaaccattt |
5430836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 31051554 - 31051811
Alignment:
| Q |
1 |
aagttttagggctagttcctaatgatgcccaacaagttacggaatttttgaatgaatcctggtctaacatggctcaaaatgatgagagtgttgatttggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
31051554 |
aagttttagggctagttcctaatgatgcccaacaagttacggaatttttgtgtgaatcctgatctaacatggctcaaaatgatgagagtgttgatttggg |
31051653 |
T |
|
| Q |
101 |
tggaaatacaaatcaaccatttcaactggtggttccgagaaagtcaaaaagaaggttaaagaagcagcaaaccgaggctaacaaaggattcaaggtaggt |
200 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
31051654 |
tggaaacacaaattaaccatttcaactggtggttccgagaaagtcaaagagaaggttaaagaagcagcaaaccgaggctaacaaagaattcaaggtaggt |
31051753 |
T |
|
| Q |
201 |
gcttcgaactgtaccccgcgctagctcgttggtctgttgttgttccttatgcttttat |
258 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31051754 |
gcttcgaaccgtaccccgcgctagttcgttggtctgttgttgttccttatgcttttat |
31051811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 13263761 - 13263575
Alignment:
| Q |
1 |
aagttttagggctagttcctaatgatgcccaacaagttacggaatttttgaatgaatcctggtctaacatggctcaaaatgatgagagtgttgatttggg |
100 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||||| || |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13263761 |
aagttttagggctaattcctactgaggcccaacaaactatggaattattgagtgaatcctggtctaacatggctcaaaatgatgagagtgttgatttggt |
13263662 |
T |
|
| Q |
101 |
tggaaatacaaatcaaccatttcaactggtggttccgagaaagtcaaaaagaaggttaaagaagcagcaaaccgaggctaacaaagg |
187 |
Q |
| |
|
|||||| |||||||||||||||||| ||| | || ||||||||||| || | ||| ||||||||||| |||||||||||||||| |
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|
| T |
13263661 |
tggaaacgcaaatcaaccatttcaacatgtgttcccaagaaagtcaaagagcaagttttagaagcagcaatccgaggctaacaaagg |
13263575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 29380469 - 29380566
Alignment:
| Q |
1 |
aagttttagggctagttcctaatgatgcccaacaagttacggaatttttgaatgaatcctggtctaacatggctcaaaatgatgagagtgttgatttgg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| |||||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
29380469 |
aagttttagggctagttcctaatgatgcccaacaagttacaaaattattgagtgaatcttggtctaaaatggctcaaaatgatgaga-tgttgatttgg |
29380566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 29381127 - 29381209
Alignment:
| Q |
108 |
acaaatcaaccatttcaactggtggttccgagaaagtcaaaaagaaggttaaagaagcagcaaaccgaggctaacaaaggattcaa |
193 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||| || |||||| ||||| ||||| |||||||||||| ||||||| |
|
|
| T |
29381127 |
acaaatcaaccatttcaactgatggttctgagaaagtcaaagagcaggtta---aagcaacaaactgaggctaacaaatgattcaa |
29381209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 60 - 258
Target Start/End: Complemental strand, 51740852 - 51740654
Alignment:
| Q |
60 |
tggtctaacatggctcaaaatgatgagagtgttgatttgggtggaaatacaaatcaaccatttcaactggtggttccgagaaagtcaaaaagaaggttaa |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| || ||||||| ||||||||||||| || | ||||| |
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|
| T |
51740852 |
tggtctaacatggctcaaaatgatgagagtgttgatttggttggaaacaaaaatcaaccatttctaccggtggtttcgagaaagtcaaagagcaagttaa |
51740753 |
T |
|
| Q |
160 |
agaagcagcaaaccgaggctaacaaaggattcaaggtaggtgcttcgaactgtaccccgcgctagctcgttggtctgttgttgttccttatgcttttat |
258 |
Q |
| |
|
|||||||| |||| ||||||| |||| |||||| ||||||| ||||||| ||| |||| ||||| | ||||| ||||||| ||||| |||||||||| |
|
|
| T |
51740752 |
agaagcagtaaactaaggctaaaaaagaattcaatgtaggtgtttcgaaccgtattccgcactagccctttggtgtgttgtttttcctcatgcttttat |
51740654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 258
Target Start/End: Complemental strand, 41599761 - 41599507
Alignment:
| Q |
4 |
ttttagggctagttcctaatgatgcccaacaagttacggaatttttgaatgaatcctggtctaacatggctcaaaatgatgagagtgttgatttgggtgg |
103 |
Q |
| |
|
|||||||||||||||||| || |||||||||| || | |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| | ||| |
|
|
| T |
41599761 |
ttttagggctagttcctatagaggcccaacaagctatgtaatttttgtgtgaatcctggtctaacatgactcaaaatgatgagaatgttgatttagttgg |
41599662 |
T |
|
| Q |
104 |
aaatacaaatcaaccatttcaactggtggttccgagaaagtcaaaaagaaggttaaagaagcagcaaaccgaggctaacaaaggattcaaggtaggtgct |
203 |
Q |
| |
|
| | ||||||||||||| |||||| ||||| | ||| ||||||| | |||||||| |||||| ||| ||| |||||||||||||||||||||||| |
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|
| T |
41599661 |
agacacaaatcaaccatctcaactaatggtttcaagagagtcaaagaacaggttaaaaaagcagtaaattgagactaacaaaggattcaaggtaggtgtg |
41599562 |
T |
|
| Q |
204 |
tcgaactgtaccccgcgctagctcgttggtctgttgttgttccttatgcttttat |
258 |
Q |
| |
|
|||||| |||||||||||| | ||||| ||||||||||||| ||| |||||| |
|
|
| T |
41599561 |
tcgaacccaaccccgcgctagtcctttggtgtgttgttgttcctcatgattttat |
41599507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 24308224 - 24308263
Alignment:
| Q |
60 |
tggtctaacatggctcaaaatgatgagagtgttgatttgg |
99 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
24308224 |
tggtctaacatggctcataatgttgagagtgttgatttgg |
24308263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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