View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_high_47 (Length: 259)
Name: NF2766_high_47
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 31051238 - 31051471
Alignment:
| Q |
17 |
ataataaggtctagggaagttacaaatgttaggtttgtgggattaaaccatgaggaagaggttcctaatatctctgtaggagtggttagtgagcaaagtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
31051238 |
ataataaggtctagggaagttacaaatgttaggtttgtgggattaattcatgaggaagaggttcctaatatctctgttggagtggttagtgagcaaactt |
31051337 |
T |
|
| Q |
117 |
tgcaggttgatgattctattctggctgagacacagaatgatgaccaacgtcacaacaaatttccggatatgcttattgttggcccttggggtgacgcagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
31051338 |
tgcaggttgatgattctattctggctgagacacagaatgatgaccaacgtcacaacaaatttccagatatgctaattgttggcccttggggtgacgcagt |
31051437 |
T |
|
| Q |
217 |
cacggatacgtattatattcaagattctccttca |
250 |
Q |
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||||||| || ||||||||||||||| ||||||| |
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| T |
31051438 |
cacggatgcggattatattcaagattatccttca |
31051471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 250
Target Start/End: Complemental strand, 13264061 - 13263844
Alignment:
| Q |
32 |
gaagttacaaatgttaggtttgtgggattaaaccatgaggaagaggttcctaatatctctgtaggagtggttagtgagcaaagtttgcaggttgatgatt |
131 |
Q |
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| T |
13264061 |
gaagttacaaatgttgtgtttatgag-ttaaaccatgtggaagaggttcgtaatatctttgttggagtttttcatgtgcaac-tttgcaggttgatgact |
13263964 |
T |
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| Q |
132 |
ctattctggctgagacacagaatgatgaccaacgtcacaacaaatttccggatatgcttattg-ttggcccttggggtgacgcagtcacggatacgtatt |
230 |
Q |
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| T |
13263963 |
atgttctggctgagacacagagggaggaccaacatcgcaacaaattttcagatatgcatattgtttgttctttggggtgatccaatcattgatgtggatt |
13263864 |
T |
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| Q |
231 |
atattcaagattctccttca |
250 |
Q |
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|||||||||||||||||||| |
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| T |
13263863 |
atattcaagattctccttca |
13263844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 35598719 - 35598949
Alignment:
| Q |
20 |
ataaggtctagggaagttacaaatgttaggtttgtgggattaaaccatgaggaagaggttcctaatatctctgtaggagtggttagtgagcaaagtttgc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
35598719 |
ataaggtctagggaagttacaaatgttaggtttgtgggattaaaccatgaggaagaggttcctaatatctctgtagaagtggttagtgagcaaactttgc |
35598818 |
T |
|
| Q |
120 |
aggttgatgattctattctggctgagacacagaatgatgaccaacgtcacaacaaatttccggatatgcttattgttggcccttggggtgacgcagtcac |
219 |
Q |
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|||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
35598819 |
aggttgattattttgttctggctgagacacagaatgatgaccaacgtcacaacaaatttccagatatgcttattgttggcccttgggatgacgcagtcac |
35598918 |
T |
|
| Q |
220 |
ggatacgtattatattcaagattctccttca |
250 |
Q |
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|||| || ||||||||||||||||||||||| |
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| T |
35598919 |
ggatgcggattatattcaagattctccttca |
35598949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 19632293 - 19632060
Alignment:
| Q |
17 |
ataataaggtctagggaagttacaaatgttaggtttgtgggattaaaccatgaggaagaggttcctaatatctctgtaggagtggttagtgagcaaagtt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
19632293 |
ataataaggtctagggaagttacaaatgttaggtttgtgggattaaaccatgaggaagaggttcctaatatctctgttggagtggttagtgagcaaactt |
19632194 |
T |
|
| Q |
117 |
tgcaggttgatgattctattctggctgagacacagaatgatgaccaacgtcacaacaaatttccggatatgcttattgttggcccttggggtgacgcagt |
216 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| | |
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| T |
19632193 |
tgcaggttgatgattctgttctggctgagacactgaatgatgaccaacgtcacaatatatttccggatatgcttatttttggcccttggggtgacgcaat |
19632094 |
T |
|
| Q |
217 |
cacggatacgtattatattcaagattctccttca |
250 |
Q |
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|| |||| || ||||||||||||||||||||||| |
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| T |
19632093 |
catggatgcggattatattcaagattctccttca |
19632060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 5430544 - 5430643
Alignment:
| Q |
158 |
gaccaacgtcacaacaaatttccggatatgcttattgttggcccttggggtgacgcagtcac-ggatacgtattatattcaagattctccttcatctcag |
256 |
Q |
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||||||| ||| ||||||||||||||||||| ||||||||| |||||| |||| |||||||| |||| | ||||||||||||||||||||||| ||||| |
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| T |
5430544 |
gaccaacatcataacaaatttccggatatgcatattgttggtccttggagtgatgcagtcactggatgtggattatattcaagattctccttcaactcag |
5430643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 27305262 - 27305029
Alignment:
| Q |
17 |
ataataaggtctagggaagttacaaatgttaggtttgtgggattaaaccatgaggaagaggttcctaatatctctgtaggagtggttagtgagcaaagtt |
116 |
Q |
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||||||||||||| | ||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||| || |
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| T |
27305262 |
ataataaggtctacgtaagttacaaatgtcatgtttgtgggattaaaccatgatgaagaggttcctaatatctatgttggagtggttagttagcaaactt |
27305163 |
T |
|
| Q |
117 |
tgcaggttgatgattctattctggctgagacacagaatgatgaccaacgtcacaacaaatttccggatatgcttattgttggcccttggggtgacgcagt |
216 |
Q |
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|| |||||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||| || |||||| ||||||||| ||||||||||||| ||| |
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| T |
27305162 |
tgtaggttgatgattttgttctggctgagacacaaaatgatgaccaacatcacaacaaattttcgaatatgcctattgttggtccttggggtgacggagt |
27305063 |
T |
|
| Q |
217 |
cacggatacgtattatattcaagattctccttca |
250 |
Q |
| |
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||| ||| | ||||||||||||||||||||||| |
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| T |
27305062 |
cactgatgcaaattatattcaagattctccttca |
27305029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 41600028 - 41599914
Alignment:
| Q |
17 |
ataataaggtctagggaagttacaaatgttaggtttgtgggattaaaccatgaggaagaggttcctaatatctctgtaggagtggttagtgagcaaagtt |
116 |
Q |
| |
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|||||||||||||| ||||||||||| | |||||||||||||| ||| |||||||||||| ||||||||| ||| ||||| ||| || |||| || |
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| T |
41600028 |
ataataaggtctagagaagttacaaagtatgtgtttgtgggattaagccacgaggaagaggttgctaatatctttgttggagttgttcttgtgcaacctt |
41599929 |
T |
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| Q |
117 |
tgcaggttgatgatt |
131 |
Q |
| |
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||||||||||||||| |
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| T |
41599928 |
tgcaggttgatgatt |
41599914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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