View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_high_54 (Length: 247)
Name: NF2766_high_54
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_high_54 |
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| [»] scaffold0726 (1 HSPs) |
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| [»] scaffold0557 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 7963485 - 7963557
Alignment:
| Q |
165 |
attttggcctattttacgttcatttttacaattatgtaaaccgctatttcagagaaattgtttttatcctttg |
237 |
Q |
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| T |
7963485 |
attttggcctattttacattcatttttacaattatgtgaaccgttatttcagagaaattgtttttatcctttg |
7963557 |
T |
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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 18716752 - 18716681
Alignment:
| Q |
165 |
attttggcctattttacgttcatttttacaattatgtaaaccgctatttcagagaaattgtttttatcctttg |
237 |
Q |
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| T |
18716752 |
attttggcctattttactttcatttttacaattatgtgaaccgttatttcagaggaattg-ttttatcctttg |
18716681 |
T |
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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 14464960 - 14464896
Alignment:
| Q |
171 |
gcctattttacgttcatttttacaattatgtaaaccgctatttcagagaaattgtttttatcctttg |
237 |
Q |
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| T |
14464960 |
gcctattttactttcatttttacaattatgtgaaccg-tttttcagagaaattg-ttttatcctttg |
14464896 |
T |
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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 29467316 - 29467387
Alignment:
| Q |
165 |
attttggcctattttacgttcatttttacaattatgtaaaccgctatttcagagaaattgtttttatcctttg |
237 |
Q |
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| T |
29467316 |
attttggcccattttactttcatttttacaattatgtgaaccgttatttcagagaaattg-ttttatcctttg |
29467387 |
T |
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Target: scaffold0726 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 4416 - 4479
Alignment:
| Q |
165 |
attttggcctattttacgttcatttttacaattatgtaaaccgctatttcagagaaattgtttt |
228 |
Q |
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| T |
4416 |
attttggccttttttactttcatttttacaattatgtgaaccgttatttcagagaaattgtttt |
4479 |
T |
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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 19110672 - 19110735
Alignment:
| Q |
165 |
attttggcctattttacgttcatttttacaattatgtaaaccgctatttcagagaaattgtttt |
228 |
Q |
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| T |
19110672 |
attttggcctattttactttcatttttacaattatgtgaactgttatttcagagaaattgtttt |
19110735 |
T |
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Target: scaffold0557 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 7908 - 7837
Alignment:
| Q |
165 |
attttggcctattttacgttcatttttacaattatgtaaaccgctatttcagagaaattgtttttatcctttg |
237 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| |||||||||||| |
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| T |
7908 |
attttggcctattttactctcatttttacaattatgtgaaccgttattttagagaaatt-attttatcctttg |
7837 |
T |
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