View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2766_high_61 (Length: 226)

Name: NF2766_high_61
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2766_high_61
NF2766_high_61
[»] chr8 (1 HSPs)
chr8 (7-181)||(17112164-17112340)
[»] chr7 (1 HSPs)
chr7 (7-203)||(3702149-3702330)
[»] chr5 (1 HSPs)
chr5 (7-57)||(28668548-28668598)
[»] chr1 (1 HSPs)
chr1 (7-62)||(14783750-14783805)
[»] chr4 (4 HSPs)
chr4 (23-85)||(17257769-17257831)
chr4 (7-84)||(16176108-16176185)
chr4 (7-63)||(36471330-36471386)
chr4 (23-63)||(10182571-10182611)
[»] chr3 (1 HSPs)
chr3 (7-63)||(23646931-23646987)


Alignment Details
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 17112164 - 17112340
Alignment:
Q  7 caagagcaaccagaaaaagaataaaggctatcaaacccgctccaagggtccgttacctacttcgtatcaatgaagatttcatggtaaaaaggtgtctgtg 106  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||| ||||    
T  17112164 caagagcaacc-gaaaaagaataaaggctatcaaacccgttccaagggtccattaccaacttcgcctcaatgaagatttcatggtaaaaaggtgtatgtg 17112262  T
Q  107 gcagctatttttgcgcatatcttgtatcttg---agcggcatctttgggctgagctaaccatcttcacactgttcaga 181  Q
    | |||||||| |||||||| |||||||||||   |||| |  ||||||| ||| ||||||||||||||| ||||||||    
T  17112263 gtagctatttatgcgcataacttgtatcttgatcagcgtcgactttgggttgatctaaccatcttcacattgttcaga 17112340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 3702330 - 3702149
Alignment:
Q  7 caagagcaaccagaaaaagaataaaggctatcaaacccgctccaagggtccgttacctacttcgtatcaatgaagatttcatggtaaaaaggtgtctgtg 106  Q
    ||||||||||| ||||||| |||||| |||| ||||||| |||||||||| |||||| ||||||| ||||||||||||||||||||||       |||||    
T  3702330 caagagcaaccggaaaaaggataaagactat-aaacccgttccaagggtctgttaccaacttcgtctcaatgaagatttcatggtaaa-------ctgtg 3702239  T
Q  107 gcagctatttttgcgcatatcttgtatcttgagcggcatctttgggctgagctaaccatcttcacactgttcagatacggtttggtggaaatttatg 203  Q
    |||||||||||||| ||       |||||||| || ||||||| || ||| |||| ||| || |||||||||| | |||||||||||| ||||||||    
T  3702238 gcagctatttttgcaca-------tatcttgatcgacatctttaggttgatctaatcatgtttacactgttcaaacacggtttggtgggaatttatg 3702149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 28668548 - 28668598
Alignment:
Q  7 caagagcaaccagaaaaagaataaaggctatcaaacccgctccaagggtcc 57  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  28668548 caagagcaaccggaaaaagaataaaggctatcaaacccgctcgaagggtcc 28668598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 14783750 - 14783805
Alignment:
Q  7 caagagcaaccagaaaaagaataaaggctatcaaacccgctccaagggtccgttac 62  Q
    ||||||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||    
T  14783750 caagagcaaccagaataagaaaaaaggttattaaacccgctccaagggtccgttac 14783805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 17257769 - 17257831
Alignment:
Q  23 aagaataaaggctatcaaacccgctccaagggtccgttacctacttcgtatcaatgaagattt 85  Q
    ||||| ||| |||||||||||||||||| |||||||||| | |||||||  ||||||||||||    
T  17257769 aagaagaaatgctatcaaacccgctccaggggtccgttatcaacttcgtcccaatgaagattt 17257831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 16176185 - 16176108
Alignment:
Q  7 caagagcaaccagaaaaagaataaaggctatcaaacccgctccaagggtccgttacctacttcgtatcaatgaagatt 84  Q
    ||||||||||| ||| ||||||||| | |||||||||||||||  |||||||||||| | | ||| || |||||||||    
T  16176185 caagagcaaccggaagaagaataaaagttatcaaacccgctcccggggtccgttaccaaatccgtctctatgaagatt 16176108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 36471330 - 36471386
Alignment:
Q  7 caagagcaaccagaaaaagaataaaggctatcaaacccgctccaagggtccgttacc 63  Q
    |||| |||||||||| ||| | ||| | |||||||||||||||||||||||||||||    
T  36471330 caagcgcaaccagaagaagcaaaaatgttatcaaacccgctccaagggtccgttacc 36471386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 10182571 - 10182611
Alignment:
Q  23 aagaataaaggctatcaaacccgctccaagggtccgttacc 63  Q
    ||||| ||||| ||||||||||||||| |||||||||||||    
T  10182571 aagaagaaaggatatcaaacccgctcccagggtccgttacc 10182611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 23646931 - 23646987
Alignment:
Q  7 caagagcaaccagaaaaagaataaaggctatcaaacccgctccaagggtccgttacc 63  Q
    ||||||||||| ||| ||| | ||||| ||||||||||| |||||||||||||||||    
T  23646931 caagagcaaccggaagaagcaaaaaggttatcaaacccgatccaagggtccgttacc 23646987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University