View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_high_62 (Length: 226)
Name: NF2766_high_62
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_high_62 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 10195895 - 10196086
Alignment:
| Q |
17 |
cacagaaaataggaaaaacaacataaataaacccccaacacaaaatacccagaagagattcacctgcttatccaaaacagcatctacaatccttttcttc |
116 |
Q |
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| T |
10195895 |
cacagaaaataggaaaaacaacataaataaacccccaacacaaaatacccagaagaaattcacctgcttatccaaaacagcatctacaatccttttcttc |
10195994 |
T |
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| Q |
117 |
acatcttcaaaatcatattacaacttaattcagaaagggtaaaaatcaattacttaaaaaagataaagataaagtaactgtgaaacaaaatt |
208 |
Q |
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| T |
10195995 |
acatcttcaaaatcacattacaacttaattcagaaacggtaaaaatcaattatttaaaaaagataaagataaagtaactgtgaaacaaaatt |
10196086 |
T |
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Target: scaffold0268 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 24185 - 24000
Alignment:
| Q |
17 |
cacagaaaataggaaaaacaacataaataaacccccaacacaaaatacccagaagagattcacctgcttatccaaaacagcatctacaatccttttcttc |
116 |
Q |
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| T |
24185 |
cacagaaaataggaaaaacaacataaataaacccccaagacaaaatacccagaagaaattcacctgcttatccaaaacagcatctacaatccttttcttc |
24086 |
T |
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| Q |
117 |
acatcttcaaaatcatattacaacttaattcagaaagggtaaaaatcaattacttaaaaaagataaagataaagtaactgtgaaacaaaatt |
208 |
Q |
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| T |
24085 |
acatcttcaaaatcatattacaacttaattcagaaagggtaaaaatcaattatttaaaaaagat------aaagtaactgtgaaacaaaatt |
24000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 19458713 - 19458516
Alignment:
| Q |
14 |
gagcacagaaaataggaaaaacaacataaataaacccccaacacaaaatacccagaagagattcacctgcttatccaaaacagcatctacaatccttttc |
113 |
Q |
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|||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||| ||||||||||| ||||||||||||||| |||||||||||| |
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| T |
19458713 |
gagcacagaaaataggaagaaca---taaataaacccccaagacaaaatacccaaaagaaattcacctgctcatccaaaacagcatccacaatccttttc |
19458617 |
T |
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| Q |
114 |
ttcacatcttc-------aaaatcatattacaacttaattcagaaagggtaaaaatcaattacttaaaaaagataaagataaagtaactgtgaaacaaaa |
206 |
Q |
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| T |
19458616 |
ttcacatctaccacacaagaaatcatattacaacttaattcaaaaagggtaaaaatcaattattcaaaatagaaaaagataaagaaactgtgaaacaaaa |
19458517 |
T |
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