View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_1 (Length: 892)
Name: NF2766_low_1
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 100 - 601
Target Start/End: Original strand, 15871179 - 15871680
Alignment:
| Q |
100 |
ttgaatgcactaatacttgaaatttaactctttctcaattttccctatttacaggcttcgtgagcttcatacccttaaaggacatgttgaatctgttgtg |
199 |
Q |
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| T |
15871179 |
ttgaatgaactaatacttgaaatttaactttttctgaattttcactctttacaggcttcgtgaacttcatacccttaaaggacatgttgaatctgttgtg |
15871278 |
T |
|
| Q |
200 |
aagctgaaaggacttgacatagagactatgcaacaacattacactgtgtaatataagcaacacagacaaatgttgttgtagatagttaaggaaagaaaag |
299 |
Q |
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| T |
15871279 |
aagctgaaaggactggacatagagactatgcaacaacattacactgtgtaatataagcaacacagacaaatgttgttgtagatagttaaggaaagaaaag |
15871378 |
T |
|
| Q |
300 |
ataaattgccattaggtagggagagaaattctgtgatatatctctcccagtgttttactttattaatgcatttctagtaaacttttgatgcttgagacaa |
399 |
Q |
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| T |
15871379 |
ataaattgccattaggtagggagagaaattctgtgatatatctctcccagtgttttactttattaatgcatttctagtaaacttttgatgcttgagacaa |
15871478 |
T |
|
| Q |
400 |
agaagttttagtttcaatcaaatattatatggttctatatgcttttgagtccaccaatttctcaatttgtggttttcatttttattttatgcaaacatta |
499 |
Q |
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| T |
15871479 |
agaagttttagtttcaatcaaatattatatgcttctctatgcttttgagtccaccaatttctcaatttgtggttttcatttttattttatgcaaacatta |
15871578 |
T |
|
| Q |
500 |
ttgggaaacttgtgtgaataagcattatgaaaaatttcaacatggtctcaactcattctcatgttatttttgtcttttggaaacacaatgacaagcaaat |
599 |
Q |
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| T |
15871579 |
ttgggaaacttgtgtgaataagcattatgaaaattttcaacatggtagcaactcattttcatgttatttttgtcttttgggaacactatgacaagcaaat |
15871678 |
T |
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| Q |
600 |
ac |
601 |
Q |
| |
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|| |
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| T |
15871679 |
ac |
15871680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 613 - 875
Target Start/End: Original strand, 15871728 - 15871987
Alignment:
| Q |
613 |
cgaccgataaagaattgattcataccttacatggtcatggattcatcatcgcttcccgcgtaaggatataatttgtaggtaatctatgaatccttattct |
712 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15871728 |
cgaccgataaagaattgattcatacctcacatggtcatggattcatcatcgcttcccgcgtaaggatataatttgtaggtaatctatgaatgtttattct |
15871827 |
T |
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| Q |
713 |
gagtttttatgcctgcctagatgaacctccaggaccaaactcgcaaaaacnnnnnnnnncttagaaaaagagcgtaagaaagtaatctttaattaagtgc |
812 |
Q |
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| T |
15871828 |
gagtttttatgcctgtc-cgatgagcctccaggaccaaactcgcaaaaac--tttttttcttaaaaaaagagcataagaaagtaatctttaatcaagtac |
15871924 |
T |
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| Q |
813 |
ctcttttgagctttgacgtttgtcttaactagcctctgggtctcaacttgcatacaattatac |
875 |
Q |
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| T |
15871925 |
ctcttttgagctttgatgtttgtcttagctagcctctgagtctcaacttgcatacaattatac |
15871987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 15871038 - 15871131
Alignment:
| Q |
15 |
tcacgatgattattactttctatcgtctcgtacataagcaacaaaaatagttaatatcgtttaattttcatgacgtagtataacattgaatgca |
108 |
Q |
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| T |
15871038 |
tcacgatgattattactttctatcgtctcgtacataagcaacaaaaatagttaatatcgtttaattttcatgacgtaatataacattgaatgca |
15871131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 45196005 - 45195920
Alignment:
| Q |
161 |
gagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaaggacttgacatagagactatgcaacaacattacactgt |
246 |
Q |
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| T |
45196005 |
gagcttcacacactgaaaggacatgttgagtctgttgtaaaactcaagggacttgacattgagacaatccaacaacactacactgt |
45195920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 53073875 - 53073812
Alignment:
| Q |
147 |
tttacaggcttcgtgagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaagg |
210 |
Q |
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| T |
53073875 |
tttacaggcttcgtgagcttcacacactcaagggacatgttgaatctgtggtgaagctgaaagg |
53073812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 48434949 - 48434867
Alignment:
| Q |
161 |
gagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaaggacttgacatagagactatgcaacaacattacac |
243 |
Q |
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| T |
48434949 |
gagctccatacactcaagggacatgttgaatctgtggtgaagttgaagggtcttgacattgatacgattcaacaacactacac |
48434867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 50278288 - 50278384
Alignment:
| Q |
150 |
acaggcttcgtgagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaaggacttgacatagagactatgcaacaacattacactgt |
246 |
Q |
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| T |
50278288 |
acaggcttagggagcttcacacactaaagggtcacgttgaatcagtcgtgaagcttaagggacttgatatcgacactatgcaacaacattatactgt |
50278384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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