View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_12 (Length: 513)
Name: NF2766_low_12
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 5 - 469
Target Start/End: Complemental strand, 9829460 - 9828999
Alignment:
| Q |
5 |
gcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttgatgca |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9829460 |
gcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttgatgca |
9829361 |
T |
|
| Q |
105 |
tctgattgtgaagacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattctaattttcaagatgtatttg |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9829360 |
tctgattgtgaagacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattctaattttcaagatgtatctg |
9829261 |
T |
|
| Q |
205 |
atatgcaaggtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgtactccaattatgatcaaagcaataaggaagattc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9829260 |
atatgcaaggtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgtactccaattatgatcaaagcaacgaggaagattc |
9829161 |
T |
|
| Q |
305 |
tgattttgttgaagatctcttatgtgctgtaataccgaaaaggaaacggactcataatgtctttattagtgagtatgaaannnnnnnnnnnnnnnnnaaa |
404 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
9829160 |
tgattttgttgaagatctcttatgtgctgtaattccgaaaaggaaacggactcgtaatgtctttattagtgagtatgaaa---atgatgatgatgataaa |
9829064 |
T |
|
| Q |
405 |
ccgatttgtaaacttatatggaatcgtgttcaggaaagaagtgctgacgagttagtaaatgttgt |
469 |
Q |
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| T |
9829063 |
ccgattagtaaacttataaggaatcgtgttcaggaaagaagtgctgatgagttagtaaatgttgt |
9828999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 384
Target Start/End: Complemental strand, 9755993 - 9755629
Alignment:
| Q |
16 |
caacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttgatgcatctgattgtga |
115 |
Q |
| |
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||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |
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| T |
9755993 |
caacaaacgatgatgatgaactagaagaggatttgacatacagtgaggaaggaaacatgaatgattttattgttgatgattttgatgcatctgattgtga |
9755894 |
T |
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| Q |
116 |
agacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattctaattttcaagatgtatttgatatgcaaggt |
215 |
Q |
| |
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|| ||||||||||| ||||| ||||| ||||||||||||||| |||| ||| ||||||||||| ||| ||||||||||||| | |||||||||||| |
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| T |
9755893 |
aggcatgtctaatacttcacaagatgagtctaatagtgacgcagaat----tactagtaacaagaactcttattttcaagatgtgtctgatatgcaaggc |
9755798 |
T |
|
| Q |
216 |
agtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgtactccaattatgatcaaagcaataaggaagattctgattttgttg |
315 |
Q |
| |
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||| ||| || ||||| |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
9755797 |
agtgaatatatttctcagtcaacatgttctgcaacaaaaaagggaaagaatttgtactccaattatgatcaaagcagtgaggaagattctgattttgttg |
9755698 |
T |
|
| Q |
316 |
aagatctcttatgtgctgtaataccgaaaaggaaacggactcataatgtctttattagtgagtatgaaa |
384 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||||| |||||||||||| ||||||| ||||| |
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| T |
9755697 |
aagatctcttatgtgctgtaattccaaaaaggaaacggactcgtaatgtctttataagtgagtctgaaa |
9755629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 50 - 311
Target Start/End: Complemental strand, 9814122 - 9813864
Alignment:
| Q |
50 |
gacatacagtgaggaaggaaacaatattgattttattggtgatgattttgatgcatctgattgtgaagacatgtctaataattcactagatgggtctaat |
149 |
Q |
| |
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|||| ||| |||||||| |||||||| ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
9814122 |
gacacacaatgaggaagaaaacaatagtgattttattg---attattttgatgcatctgattgtgaaggcatgtctaataattcacgagatgagtctagc |
9814026 |
T |
|
| Q |
150 |
agtgacgcggaatctaatacgagtaacaagaattctaattttcaagatgtatttgatatgcaaggtagtcaatgtaattctctgtcaacgtgttctgcag |
249 |
Q |
| |
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|||||||| ||||||| | || ||| |||| ||||| |||| |||||||||| |||||||||||||||| | ||| |||||||||||| |||||||| |
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| T |
9814025 |
agtgacgcagaatctagttcgtgtagcaaggattcttatttgcaagatgtatctgatatgcaaggtagtggaagtatttctctgtcaacaaattctgcag |
9813926 |
T |
|
| Q |
250 |
cagaaaagggaaagaatttgtactccaattatgatcaaagcaataaggaagattctgatttt |
311 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||||||| |||| | ||| | ||||||||| |
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| T |
9813925 |
cagaaaagggaaagaatttttactccaattaggatcaaatcaatgacgaaaaatctgatttt |
9813864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 9708628 - 9708475
Alignment:
| Q |
1 |
atcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttga |
100 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| ||| || ||||| | |||| |||||||||| ||| || ||||||||||| ||||||| |||| |
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| T |
9708628 |
atcagcagagtattccaaaaaatgatgatgatgacctaggagtggatttgtcatatagtgaggaagataaccttagtgattttattgttgatgatgttga |
9708529 |
T |
|
| Q |
101 |
tgcatctgattgtgaagacatgtctaataattcactagatgggtctaatagtga |
154 |
Q |
| |
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||||||||||||||||||||| ||| |||| |||| || | |||||||||||| |
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| T |
9708528 |
tgcatctgattgtgaagacatatctgataagtcacaggaagagtctaatagtga |
9708475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 9804250 - 9804111
Alignment:
| Q |
171 |
agtaacaagaattctaattttcaagatgtatttgatatgcaaggtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgt |
270 |
Q |
| |
|
|||| |||| ||||| |||| || ||||||| ||| |||||||||||| | ||| ||||||| |||| ||||||||||||||||| | ||||| || | |
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| T |
9804250 |
agtagcaaggattcttatttgcaggatgtatctgaaatgcaaggtagtggaggtatttctctgccaacaagttctgcagcagaaaagcg-aagaactttt |
9804152 |
T |
|
| Q |
271 |
actccaattatgatcaaagcaataaggaagattctgatttt |
311 |
Q |
| |
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|||||||||||||||||| |||| ||||| |||||||||| |
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| T |
9804151 |
actccaattatgatcaaaacaatgaggaaatttctgatttt |
9804111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 412 - 469
Target Start/End: Complemental strand, 9755592 - 9755535
Alignment:
| Q |
412 |
gtaaacttatatggaatcgtgttcaggaaagaagtgctgacgagttagtaaatgttgt |
469 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
9755592 |
gtaaacttgtaaggaatcatgttcaggaaagaagtgctgacgagttggtaaatgttgt |
9755535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 9755380 - 9755264
Alignment:
| Q |
1 |
atcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | |||||| | || | ||||||||||||||| | | |||||||| |||||||||||| |
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|
| T |
9755380 |
atcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatcacaaagtgaggaaggaaacttgaaaggttttattgttgatgattttga |
9755281 |
T |
|
| Q |
101 |
tgcatctgattgtgaag |
117 |
Q |
| |
|
| ||||| |||||||| |
|
|
| T |
9755280 |
tttatctggttgtgaag |
9755264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 9828855 - 9828739
Alignment:
| Q |
1 |
atcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | |||||| | || | ||||||||||||||| | | |||||||| |||||||||||| |
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|
| T |
9828855 |
atcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatcacaaagtgaggaaggaaactcgaaaggttttattgttgatgattttga |
9828756 |
T |
|
| Q |
101 |
tgcatctgattgtgaag |
117 |
Q |
| |
|
|| |||| |||||||| |
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|
| T |
9828755 |
tgtatctagttgtgaag |
9828739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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