View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_15 (Length: 490)
Name: NF2766_low_15
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 16 - 469
Target Start/End: Original strand, 50392910 - 50393363
Alignment:
| Q |
16 |
atggcggttggtaattccattggtgttcatggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcctcct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50392910 |
atggcggttggtaattccattggtgttcacggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcctcct |
50393009 |
T |
|
| Q |
116 |
ttctgatcatggcagcagccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagcacactaaacctcct |
215 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393010 |
ttcttatcatggcagcagccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagcacactaaacctcct |
50393109 |
T |
|
| Q |
216 |
tagttttttcaaagattttggtagcaacgttggtgtccttgcaggactagtcaacgaactctatccaccttgggtagttttaacaataggtgctatacta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393110 |
tagttttttcaaagattttggtagcaacgttggtgtccttgcaggactagtcaacgaactctatccaccttgggtagttttaacaataggtgctatacta |
50393209 |
T |
|
| Q |
316 |
aacttttttggttactttatgatttggttatcagtcaccnnnnnnntagcaagaccaaaagtttggcaaatgtgtctttacatttgtataggtgctaatt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393210 |
aacttttttggttactttatgatttggttatcagtcaccaaaaaaatagcaagaccaaaagtttggcaaatgtgtctttacatttgtataggtgctaatt |
50393309 |
T |
|
| Q |
416 |
ctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctg |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393310 |
ctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctg |
50393363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 469
Target Start/End: Original strand, 50384491 - 50384944
Alignment:
| Q |
16 |
atggcggttggtaattccattggtgttcatggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcctcct |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| |
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| T |
50384491 |
atggcggtaggtaattccattggtgttcatggtttgggagacatgaagagtctcaccgtccaattcatcaccgggcgttggttcgtcatttttgcctcct |
50384590 |
T |
|
| Q |
116 |
ttctgatcatggcagcagccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagcacactaaacctcct |
215 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
50384591 |
ttctaatcatggcagcagccggagccacctacatgttcggtctatactccccagacataaaaacaacacttggctatgaccaaagtacactgaacctcct |
50384690 |
T |
|
| Q |
216 |
tagttttttcaaagattttggtagcaacgttggtgtccttgcaggactagtcaacgaactctatccaccttgggtagttttaacaataggtgctatacta |
315 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |
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|
| T |
50384691 |
tagttttttcaaagactttggtagcaacgttggtgtcctttcaggactaatcaacgaactctatccaccttgggtagttttgacaataggtgctattctc |
50384790 |
T |
|
| Q |
316 |
aacttttttggttactttatgatttggttatcagtcaccnnnnnnntagcaagaccaaaagtttggcaaatgtgtctttacatttgtataggtgctaatt |
415 |
Q |
| |
|
|| || ||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50384791 |
aatttctttggttacttcatgatttggttatcagttaccaaaaaaatagcaagaccacaagtttggcaaatgtgtctttacatttgtataggtgctaatt |
50384890 |
T |
|
| Q |
416 |
ctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctg |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50384891 |
ctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctg |
50384944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 34 - 467
Target Start/End: Original strand, 50389654 - 50390087
Alignment:
| Q |
34 |
attggtgttcatggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcctcctttctgatcatggcagcag |
133 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||||| | || | |
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|
| T |
50389654 |
attggtgttcatgattggggagacatgaagagtctcaccgtccaagtcatcaccggacggtggtttgtcatttttgcctcctttctaatcatgtcggctg |
50389753 |
T |
|
| Q |
134 |
ccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagcacactaaacctccttagttttttcaaagattt |
233 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50389754 |
ccggagccacctacatgttcggtctatactccagcgacataaaagaaacacttggctatgaccaaagcacactagacctccttagttttttcaaagattt |
50389853 |
T |
|
| Q |
234 |
tggtagcaacgttggtgtccttgcaggactagtcaacgaactctatccaccttgggtagttttaacaataggtgctatactaaacttttttggttacttt |
333 |
Q |
| |
|
||||||||| |||||| |||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||| || || ||||||||||| |
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|
| T |
50389854 |
tggtagcaatgttggtatccttgcaggactaatcaacgaaatctctccaccttgggtagttttagcaataggtgctatacttaatttctttggttacttc |
50389953 |
T |
|
| Q |
334 |
atgatttggttatcagtcaccnnnnnnntagcaagaccaaaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaaca |
433 |
Q |
| |
|
|||||||||||||| | || | ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50389954 |
atgatttggttatccataacaaaaaaaattgcaagaccacatgtttggcaaatgtgtctttacatttgcataggtgctaattctcagtcttttgcaaaca |
50390053 |
T |
|
| Q |
434 |
ctggttcacttgtgacttgtgttaagaatttccc |
467 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||| |
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|
| T |
50390054 |
ccggttcacttgttacttgtgttaagaatttccc |
50390087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 82 - 467
Target Start/End: Original strand, 50406589 - 50406974
Alignment:
| Q |
82 |
atcaccggacggtggttcgtcatttttgcctcctttctgatcatggcagcagccggagccacctacatgtttggtctatactccggcgacataaaaacaa |
181 |
Q |
| |
|
||||| ||||| |||||||| | ||||| || ||||| |||||| |||| | ||||||||||||||||||||||| ||||| | |||||||||| |
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|
| T |
50406589 |
atcacaggacgatggttcgtggtgtttgcttcttttctaatcatgtcagcttcaggagccacctacatgtttggtctttactctagtaccataaaaacat |
50406688 |
T |
|
| Q |
182 |
cacttggctatgaccaaagcacactaaacctccttagttttttcaaagattttggtagcaacgttggtgtccttgcaggactagtcaacgaactctatcc |
281 |
Q |
| |
|
| | | ||||||||||| || || |||||||||||||| |||||||| || ||| ||||| ||||||| | | || || |||| ||| || || |
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|
| T |
50406689 |
ccttagcctatgaccaaacaactcttaacctccttagtttcttcaaagacttaggtggcaaccttggtgttttctctggcttaatcaatgaaatcacacc |
50406788 |
T |
|
| Q |
282 |
accttgggtagttttaacaataggtgctatactaaacttttttggttactttatgatttggttatcagtcaccnnnnnnntagcaagaccaaaagtttgg |
381 |
Q |
| |
|
||||| || ||| | |||| ||| | | || ||||| ||||||||||||||||| |||||| |||| || || ||| ||| ||||||||| |
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|
| T |
50406789 |
accttatgttgttcttgcaattggttcccttcttaacttctttggttactttatgatatggttagcagtgactaaaaaaataccaaaaccgaaagtttgg |
50406888 |
T |
|
| Q |
382 |
caaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccc |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50406889 |
caaatgtgtctttacatttgtataggtgctaattctcagtctttttcaaacactggttcacttgttacttgtgttaagaatttccc |
50406974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 468
Target Start/End: Original strand, 41333948 - 41334043
Alignment:
| Q |
373 |
aaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccct |
468 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||| |||||||| ||||| | ||||| ||| | | || ||||||||||||||||||||| |
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|
| T |
41333948 |
aaagtttggcaaatgtgtctttatatttgcattggtgcaaattctcaaacttttactaacacaggtgctttagttacttgtgttaagaatttccct |
41334043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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