View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_16 (Length: 483)
Name: NF2766_low_16
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 30 - 477
Target Start/End: Complemental strand, 41761061 - 41760614
Alignment:
| Q |
30 |
ctgctcttaccaattgttgaggagtttgaatagccagaatagaaagtggtggagtagaagatcgattgagaacaaagtcaccagccacagcaacttgaga |
129 |
Q |
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| T |
41761061 |
ctgctcttaccaattgttgaggagtttgaataacctgaatagaaagtggtggagtagaagatcgattgagaacaaagtcaccagccacagcaacttgaga |
41760962 |
T |
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| Q |
130 |
cttctccatagtttttgtaacagcaccactttgtgaactccataaatggtgtaggtatggaaaaggaatccaatcagaagggttaggacccgatacagaa |
229 |
Q |
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| T |
41760961 |
cttctccatagtttttgtaacagcaccactttgtgaactccataaatggtgtaggtatggaaaaggaacccaatcagaagggttaggacccgatacagaa |
41760862 |
T |
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| Q |
230 |
acaagcactgcaatcactatgagtggaaccataataaacaagagttttattgatgaagatgattcaaaagccattgtattcttattaatgctgcatatag |
329 |
Q |
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| T |
41760861 |
acaagcactgcaatcactatgagtggaaccataataaacaagagttttattgatgaagatgattcaaaagccattgtattcttattaatgctgcatatag |
41760762 |
T |
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| Q |
330 |
tacgtagagttatatggtaggagaaatcatgatgattttgttagtgaaaaagaaaagatgtgagaagagttgagacagaggagtagggttaaacataaag |
429 |
Q |
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| T |
41760761 |
tacgtagagttatatggtaggagaaatcatgatgattttgttagtgaaaaagaaaagatgtgagaagagttgagacagaggagtagggttaaacataaag |
41760662 |
T |
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| Q |
430 |
cagaaatgttttgggtgggatatataatattcataggaaggaagaatc |
477 |
Q |
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| T |
41760661 |
cagaaatgttttgggtgggatatataatattcataggaaggaagaatc |
41760614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 41752710 - 41752674
Alignment:
| Q |
111 |
cagccacagcaacttgagacttctccatagtttttgt |
147 |
Q |
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| T |
41752710 |
cagccacaacaacttgagccttctccatagtttttgt |
41752674 |
T |
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