View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_17 (Length: 476)
Name: NF2766_low_17
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 20519465 - 20519000
Alignment:
| Q |
1 |
cttcctaaaatgataggtatttcatcatctatttcaaaaactaaaatgataaactatgcgggaaaaacaaacttatcatgcctaaccaacacatattcaa |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
20519465 |
cttcctaaaatgataggtatctcatcatctatttcaaaaactaaaatgataaactctgcgggaaatacaaacttatcatgcctaaccaacacataatcaa |
20519366 |
T |
|
| Q |
101 |
ttctttattttaaatgacaaatgcttaaatattgaatttgatatctaattgatactggatcttaagtcacaaagtgacatgcaatagtaaatttcatcaa |
200 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20519365 |
ttctttattttgaatgaaaaatgcttaaatattgaatttgatatctaattgatactggatcttaagtcacaaagtgacatgcaatagtaaatttcatcaa |
20519266 |
T |
|
| Q |
201 |
tattaagttcccaattgtttgaatattgacatgctcaatatttccttggatgtaagcaattatttaatgtaaaagtttgagatttaattttaaatggtaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| || |||| ||| ||||||| |||||||| |||||| | |||||||||||| |
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| T |
20519265 |
tattaagttcccaattgtttgaatattgacatgctcaatattcccttgcatttaagggattctttaatgcaaaagtttcagatttcaatttaaatggtaa |
20519166 |
T |
|
| Q |
301 |
ttggagagtacccagattacttgtccaaaaaacatcatagtaatgtgtacatcaagcacattatatgataattaacttgggtctatccttatcgaacttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20519165 |
ttggagagtacccagattacttgtccaaaaaacatcatagtaatgtgtacatcaagcacattatatgataattaacttgggtctatccttatcgaacttc |
20519066 |
T |
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| Q |
401 |
atctcctattgtatctttatcatgtaataactatcaaataaatcctttacgtgtctttatcctatg |
466 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||||||| |
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| T |
20519065 |
atatcctattgtatctttatcatgtaataattatcaaatagatccttcaagtgtctttatcctatg |
20519000 |
T |
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