View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_18 (Length: 459)
Name: NF2766_low_18
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 10 - 459
Target Start/End: Original strand, 2529262 - 2529711
Alignment:
| Q |
10 |
catcatcacctttaacaagctcaacggaacttttcgagttacaaggagaaacaaaacccggttcacaactaggactggagctaagaacagaagggcaact |
109 |
Q |
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| T |
2529262 |
catcatcacctttaacaagctcaacggaacttttcgagttacaaggcgaaacaaaacccggttcacagctaggactggagctaagaacagaagggcaact |
2529361 |
T |
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| Q |
110 |
gcattttttgtcaccaatgcatatgttataaggtccacaaggttgtggtgtactacaagaatcttgaggtattcttgttgtcgatgaaccacttgagcct |
209 |
Q |
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| T |
2529362 |
gcattttttgtcaccaatgcatatgttataaggtccacaaggttgtggtgtactacaagaatcttgaggtattcttgttgtcgatgaaccacttgagcct |
2529461 |
T |
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| Q |
210 |
ttatttttaagattggtgaaagttatgaagccatcacttcctaaaactgctatccaagttgcatttgcagcatcagaaaaaataaattgccacaacaaag |
309 |
Q |
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| T |
2529462 |
ttatttttaagattggtgaaagttatgaagccatcacttcctaaaactgctatccaagttgcatttgcagcatcagaaaaaataaattgccacaacaatg |
2529561 |
T |
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| Q |
310 |
atttccttttgtcatagaacttccatgaatttgcatcaagagttgcaaaatttacctcgtcgccgttttcattagctatttttcggatatcattttgcat |
409 |
Q |
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| T |
2529562 |
atttccttttgtcatagaacttccatgaatttgcatcaagagttgcaaaatttacctcgtcgccgttttcattaggtatttttcggatatcattttgcat |
2529661 |
T |
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| Q |
410 |
agaccaataaggctgtggagattgtaaacctgtggaaagaagaacattac |
459 |
Q |
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| T |
2529662 |
agaccaataaggctgtggagattgtaaacctgtggaaagaagaacattac |
2529711 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 31027961 - 31027917
Alignment:
| Q |
145 |
cacaaggttgtggtgtactacaagaatcttgaggtattcttgttg |
189 |
Q |
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| T |
31027961 |
cacaaggttctggtgtaccacaataatcttgtggtattcttgttg |
31027917 |
T |
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