View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2766_low_2 (Length: 636)

Name: NF2766_low_2
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2766_low_2
NF2766_low_2
[»] chr5 (17 HSPs)
chr5 (34-617)||(9659651-9660258)
chr5 (248-615)||(12108901-12109283)
chr5 (243-361)||(12104402-12104520)
chr5 (39-94)||(10102894-10102949)
chr5 (39-93)||(13856106-13856160)
chr5 (389-438)||(10101577-10101626)
chr5 (389-437)||(9661665-9661713)
chr5 (429-472)||(12104290-12104333)
chr5 (39-93)||(10109391-10109445)
chr5 (39-93)||(10212244-10212298)
chr5 (39-88)||(10209698-10209747)
chr5 (389-433)||(10213973-10214017)
chr5 (389-437)||(12110140-12110188)
chr5 (39-94)||(10105978-10106033)
chr5 (392-433)||(10102093-10102134)
chr5 (65-93)||(10215876-10215904)
chr5 (376-424)||(12104361-12104409)
[»] chr1 (1 HSPs)
chr1 (39-84)||(45152083-45152128)


Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 34 - 617
Target Start/End: Complemental strand, 9660258 - 9659651
Alignment:
Q  34 atgccagtttttggaagagtcctattcacggagggctctgcaattttagttcaatattttttggttgctattggtattctaattctaagtgccatttcaa 133  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9660258 atgccagtttttggaagagtcctattcatggagtgctctgcaattttagttcaatattttttggttgctattggtattctaattctaagtgccatttcga 9660159  T
Q  134 tggccgagtgtagtaaattttactgttattaagtgatgtggactaatataatgggtttttgtttttaacactcactttggaattttcatataaaaaattc 233  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9660158 tggccgagtgtagtaaattttactgttattaagtggtgtggactaatataatgggtttttgtttttaacactcactttggaattttcatataaaaaatgc 9660059  T
Q  234 ttctat----------gtttccagattttgtaaccatttcaatgagttaggagccactttgttcttttcatgataggttagattttacagctgacattgt 323  Q
    || |||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9660058 ttttatatttggtattgtttccagattttgtaaccatttcaatgagttaggagccactttgttcttttcatgataggttagatttaacagctgacattgt 9659959  T
Q  324 aataagttgtaaatagttttgcaagttgatttctttaacagtagcaagtttatcctgtaaacattttcaagttatggtatgaagattttcattaaaagtt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9659958 aataagttgtaaatagttttgcaagttgatttctttaacagtagcaagtttatcctgtaaacattttcaagttatcgtatgaagattttcattaaaagtt 9659859  T
Q  424 gcatgctttttaaagaacacttttcacctcagaagaattctgctttggaagtgtactgtttatgccaattaaaattaacagataatatgtgttagatttt 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  9659858 gcatgctttttaaagaacacttttcacctcagaagaattctgctttggaagtgtactgtttatgtcaatttaaattaacagataatatgtgttagatttt 9659759  T
Q  524 agttccaatagtgatggtt----------tga----gtgcgtgcgtatatgtattgtgtgatacactgatatatgcacattcaattgaactatgagtgag 609  Q
    ||||||||| ||||||| |          |||     || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9659758 agttccaatggtgatggatatctaaataatgatggtttgagtgcgtatatgtattgtgtgatacactgatatatgcacattcaattgagctatgagtgag 9659659  T
Q  610 ctagttgt 617  Q
    ||||||||    
T  9659658 ctagttgt 9659651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 248 - 615
Target Start/End: Complemental strand, 12109283 - 12108901
Alignment:
Q  248 attttgtaaccatttcaatgagttaggagccactttgttcttttcatgataggttagattttacagctgacattgtaataagttgtaaatagttttgcaa 347  Q
    |||||||||  ||||||||||| ||||| ||||||||| |||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||||    
T  12109283 attttgtaattatttcaatgagctaggacccactttgtacttttcattataggtaagattttacagctgacattgtaaaaagttgtatatagttttgcaa 12109184  T
Q  348 gttgatttctttaacagtagcaagttta-tcctgtaaacattttcaagttatggtatgaagattttcattaaaagttgcatgctttttaaagaacacttt 446  Q
    ||||||||| ||| ||||||| || | | |||| || ||||||||||||||| ||||| ||||||  |||| ||||||||||||||||||||||||||||    
T  12109183 gttgatttccttaccagtagctagctgattcctttacacattttcaagttatcgtatggagatttatattagaagttgcatgctttttaaagaacacttt 12109084  T
Q  447 tcacctcagaagaattctgctttggaagtgtactgtttatgccaattaaaattaacagataatatgtgttagattttagttccaatagtgatggtt---- 542  Q
    ||||||||||||| || ||| ||| | |  || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |        
T  12109083 tcacctcagaagagttttgcattgaatggataatgtttatgccaagtaaaattaacagataatatgtgttagattttagttccaatagtgatggatatct 12108984  T
Q  543 ------tga----gtgcgtgcgtatatgtattgtgtgatacactgatatatgcacattcaattgaactatgagtgagctagtt 615  Q
          |||     || ||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  12108983 aaacaatgatgatttgagtgtgtatatgtattgtgtgatacactgatatatgcacattcaattgagccatgagtgagctagtt 12108901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 243 - 361
Target Start/End: Complemental strand, 12104520 - 12104402
Alignment:
Q  243 tccagattttgtaaccatttcaatgagt---taggagccactttgttcttttcatgataggttagattttacagctgacattgtaataagttgtaaatag 339  Q
    |||||||| |||| |||||||||||||    ||||| |||| |||  ||||||||||| ||| |||||||||| || ||||| ||| |||||||||||||    
T  12104520 tccagattgtgtatccatttcaatgagcgcctaggacccacattg--cttttcatgatgggtaagattttacaactcacattataaaaagttgtaaatag 12104423  T
Q  340 ttttgcaagttgatttctttaa 361  Q
    |||||||| |||||| ||||||    
T  12104422 ttttgcaa-ttgattcctttaa 12104402  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 10102894 - 10102949
Alignment:
Q  39 agtttttggaagagtcctattcacggagggctctgcaattttagttcaatattttt 94  Q
    |||||||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  10102894 agtttttggaagagtcctcttcattgagggctctgcaaatttagttcaatattttt 10102949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 13856106 - 13856160
Alignment:
Q  39 agtttttggaagagtcctattcacggagggctctgcaattttagttcaatatttt 93  Q
    ||||||||| |||||||| ||||| ||||||| ||||||||||||||||||||||    
T  13856106 agtttttgggagagtcctcttcacagagggctttgcaattttagttcaatatttt 13856160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 10101577 - 10101626
Alignment:
Q  389 ttcaagttatggtatgaagattttcattaaaagttgcatgctttttaaag 438  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||||||||    
T  10101577 ttcatgttattgtatgaaggttttcattaaaagttgcatgctttttaaag 10101626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 9661713 - 9661665
Alignment:
Q  389 ttcaagttatggtatgaagattttcattaaaagttgcatgctttttaaa 437  Q
    |||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  9661713 ttcaagttatcgtatgaaggttttcaataaaagttgcatgctttttaaa 9661665  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 429 - 472
Target Start/End: Complemental strand, 12104333 - 12104290
Alignment:
Q  429 ctttttaaagaacacttttcacctcagaagaattctgctttgga 472  Q
    |||||||||||||||||||||| |||||||| ||||||||||||    
T  12104333 ctttttaaagaacacttttcacgtcagaagagttctgctttgga 12104290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 10109391 - 10109445
Alignment:
Q  39 agtttttggaagagtcctattcacggagggctctgcaattttagttcaatatttt 93  Q
    |||||||||||||||||| || | |||||||||||||||||||||| ||| ||||    
T  10109391 agtttttggaagagtcctctttatggagggctctgcaattttagttaaatttttt 10109445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 10212298 - 10212244
Alignment:
Q  39 agtttttggaagagtcctattcacggagggctctgcaattttagttcaatatttt 93  Q
    ||||||||||||||||||  |||| || ||||||||||||||||| |||||||||    
T  10212298 agtttttggaagagtcctcctcaccgaaggctctgcaattttagtacaatatttt 10212244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 10209747 - 10209698
Alignment:
Q  39 agtttttggaagagtcctattcacggagggctctgcaattttagttcaat 88  Q
    ||||||||||||||| || || | ||||||||||||||||||||||||||    
T  10209747 agtttttggaagagttctctttatggagggctctgcaattttagttcaat 10209698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 433
Target Start/End: Complemental strand, 10214017 - 10213973
Alignment:
Q  389 ttcaagttatggtatgaagattttcattaaaagttgcatgctttt 433  Q
    |||||||||| |||||||| ||||||||||||||| |||||||||    
T  10214017 ttcaagttatcgtatgaaggttttcattaaaagttacatgctttt 10213973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 12110188 - 12110140
Alignment:
Q  389 ttcaagttatggtatgaagattttcattaaaagttgcatgctttttaaa 437  Q
    |||||||||  |||||||| |||||| ||||||||||||||||||||||    
T  12110188 ttcaagttactgtatgaaggttttcaataaaagttgcatgctttttaaa 12110140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 10105978 - 10106033
Alignment:
Q  39 agtttttggaagagtcctattcacggagggctctgcaattttagttcaatattttt 94  Q
    |||||||||||||||||| || |  ||||||||||||| ||||||||||| |||||    
T  10105978 agtttttggaagagtcctctttattgagggctctgcaaatttagttcaattttttt 10106033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 10102093 - 10102134
Alignment:
Q  392 aagttatggtatgaagattttcattaaaagttgcatgctttt 433  Q
    ||||||| |||||||| ||||||||||||||| |||||||||    
T  10102093 aagttatcgtatgaagtttttcattaaaagttacatgctttt 10102134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 10215904 - 10215876
Alignment:
Q  65 agggctctgcaattttagttcaatatttt 93  Q
    |||||||||||||||||||||||||||||    
T  10215904 agggctctgcaattttagttcaatatttt 10215876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 12104409 - 12104361
Alignment:
Q  376 tcctgtaaacattttcaagttatggtatgaagattttcattaaaagttg 424  Q
    |||| ||||||||||||||||||  |||| |||||||||||||| ||||    
T  12104409 tcctttaaacattttcaagttatcatatggagattttcattaaacgttg 12104361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 45152083 - 45152128
Alignment:
Q  39 agtttttggaagagtcctattcacggagggctctgcaattttagtt 84  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||    
T  45152083 agtttttggaagagtcctctttacggagggctctgcaatattagtt 45152128  T

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