View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2766_low_20 (Length: 447)

Name: NF2766_low_20
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2766_low_20
NF2766_low_20
[»] chr2 (4 HSPs)
chr2 (156-431)||(2706901-2707166)
chr2 (16-71)||(24071231-24071285)
chr2 (16-63)||(44484252-44484298)
chr2 (155-192)||(28384645-28384682)
[»] chr1 (3 HSPs)
chr1 (157-364)||(9041471-9041674)
chr1 (157-194)||(51094588-51094625)
chr1 (223-303)||(7876983-7877062)
[»] chr8 (2 HSPs)
chr8 (195-314)||(22216481-22216600)
chr8 (223-334)||(13772172-13772282)
[»] scaffold0164 (2 HSPs)
scaffold0164 (16-71)||(7810-7864)
scaffold0164 (16-71)||(15691-15745)
[»] chr7 (2 HSPs)
chr7 (16-71)||(12317012-12317066)
chr7 (16-63)||(18565138-18565184)
[»] chr4 (1 HSPs)
chr4 (16-70)||(18808334-18808387)
[»] chr5 (2 HSPs)
chr5 (16-71)||(19832830-19832884)
chr5 (156-198)||(23192511-23192553)
[»] scaffold0553 (1 HSPs)
scaffold0553 (155-194)||(6575-6614)
[»] chr6 (3 HSPs)
chr6 (155-185)||(19002769-19002799)
chr6 (156-194)||(19214808-19214846)
chr6 (157-199)||(19706944-19706986)
[»] chr3 (2 HSPs)
chr3 (157-194)||(24552609-24552646)
chr3 (157-194)||(24558748-24558785)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 156 - 431
Target Start/End: Complemental strand, 2707166 - 2706901
Alignment:
Q  156 cccgtctgtccgctttttctaccgcgctaaagtatgtatgtatgcatgtatttgattatannnnnnngtataaattaatatacaatatggaatacacaaa 255  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    ||||||||||||       |||||||||||||||||||||||||||||||||    
T  2707166 cccgtctgtccgctttttctactgcgctaacgtatgtatgtatg----tatttgattatatttttttgtataaattaatatacaatatggaatacacaaa 2707071  T
Q  256 tataatgtattttacacattctagaagggtaatatataaagcttatgagataaaaatctcatgaatagaactaataggtaggtttcacaattgaataatg 355  Q
    ||||||||||||||||||||  ||||| |||||||||||||||||||| |  |||||||||||||||||||||||||||    |||||||||||| ||||    
T  2707070 tataatgtattttacacattgcagaagagtaatatataaagcttatgaca--aaaatctcatgaatagaactaataggt----ttcacaattgaaaaatg 2706977  T
Q  356 gatggcttagattaaatacatgagaaataaaataaccaatttcaacacttaacctgagttcctattggttatgttc 431  Q
    ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2706976 gatggcttacaccaaatacatgagaaataaaataaccaatttcaacacttaacctgagttcctattgtttatgttc 2706901  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 24071285 - 24071231
Alignment:
Q  16 ataggctacaccaaaaagagtgttttacctttattagatgttatagatattcttgt 71  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  24071285 ataggctacacctaaa-gagtgttttacctttattagatgttatagatattcttgt 24071231  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 44484252 - 44484298
Alignment:
Q  16 ataggctacaccaaaaagagtgttttacctttattagatgttatagat 63  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  44484252 ataggctacaccaaaa-gagtgttttacctttattagatgttatagat 44484298  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 28384682 - 28384645
Alignment:
Q  155 acccgtctgtccgctttttctaccgcgctaaagtatgt 192  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  28384682 acccgtccgtccgctttttctactgcgctaaagtatgt 28384645  T

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Target: chr1 (Bit Score: 126; Significance: 8e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 157 - 364
Target Start/End: Complemental strand, 9041674 - 9041471
Alignment:
Q  157 ccgtctgtccgctttttctaccgcgctaaagtatgtatgtatgcatgtatttgattatannnnnnngtataaattaatatacaatatggaatacacaaat 256  Q
    ||||||||| ||||||||||| |  |||| ||||||||||||| |||||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  9041674 ccgtctgtctgctttttctactgtactaatgtatgtatgtatgtatgtatttgattatatttttttgtataaattaatatacaatatggcatacacaaat 9041575  T
Q  257 ataatgtattttacacattctagaagggtaatatataaagcttatgagataaaaatctcatgaatagaactaataggtaggtttcacaattgaataatgg 356  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||    |||||||||||||||| |||||    
T  9041574 ataatgtattttacacattgtagaagagtaatatataaagcttatgacataaaaatctcatgaatagaactaat----aggtttcacaattgaaaaatgg 9041479  T
Q  357 atggctta 364  Q
    ||||||||    
T  9041478 atggctta 9041471  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 51094625 - 51094588
Alignment:
Q  157 ccgtctgtccgctttttctaccgcgctaaagtatgtat 194  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  51094625 ccgtctgtccgctttttctactgcgctaatgtatgtat 51094588  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 303
Target Start/End: Complemental strand, 7877062 - 7876983
Alignment:
Q  223 gtataaattaatatacaatatggaatacacaaatataatgtattttacacattctagaagggtaatatataaagcttatga 303  Q
    |||| |||||||||||||||||  |||| |||||||||| || ||||||   | |||||| ||| ||||||||||||||||    
T  7877062 gtatgaattaatatacaatatgttatac-caaatataatttagtttacatcatgtagaagagtagtatataaagcttatga 7876983  T

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Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 195 - 314
Target Start/End: Original strand, 22216481 - 22216600
Alignment:
Q  195 gtatgcatgtatttgattatannnnnnngtataaattaatatacaatatggaatacacaaatataatgtattttacacattctagaagggtaatatataa 294  Q
    ||||| |||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| | |||||    
T  22216481 gtatgtatgtatttgattatatttttttgtataaattaatatacaatatggcatacacaaatataatgtattttacacattgtagaagagtactctataa 22216580  T
Q  295 agcttatgagataaaaatct 314  Q
    ||||||||| ||||||||||    
T  22216581 agcttatgacataaaaatct 22216600  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 13772172 - 13772282
Alignment:
Q  223 gtataaattaatatacaatatggaatacacaaatataatgtattttacacattctagaagggtaatatataaagcttatgagataaaaatctcatgaata 322  Q
    ||||||||||||||||| ||||  || ||||||||||||||||||||| |||| |||||| ||||||||| |||||||||| |||||| |||| ||||||    
T  13772172 gtataaattaatatacactatgagattcacaaatataatgtattttacgcattgtagaagagtaatatat-aagcttatgacataaaactctcgtgaata 13772270  T
Q  323 gaactaataggt 334  Q
    |||| |||||||    
T  13772271 gaaccaataggt 13772282  T

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Target: scaffold0164 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 7864 - 7810
Alignment:
Q  16 ataggctacaccaaaaagagtgttttacctttattagatgttatagatattcttgt 71  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7864 ataggctacaccaaaa-gagtgttttacctttattagatgttatagatattcttgt 7810  T

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Target: scaffold0164; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 15745 - 15691
Alignment:
Q  16 ataggctacaccaaaaagagtgttttacctttattagatgttatagatattcttgt 71  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15745 ataggctacaccaaaa-gagtgttttacctttattagatgttatagatattcttgt 15691  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 12317012 - 12317066
Alignment:
Q  16 ataggctacaccaaaaagagtgttttacctttattagatgttatagatattcttgt 71  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12317012 ataggctacaccaaaa-gagtgttttacctttattagatgttatagatattcttgt 12317066  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 18565184 - 18565138
Alignment:
Q  16 ataggctacaccaaaaagagtgttttacctttattagatgttatagat 63  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  18565184 ataggctacaccaaaa-gagtgttttacctttattagatgttatagat 18565138  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 18808387 - 18808334
Alignment:
Q  16 ataggctacaccaaaaagagtgttttacctttattagatgttatagatattcttg 70  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18808387 ataggctacaccaaaa-gagtgttttacctttattagatgttatagatattcttg 18808334  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 19832884 - 19832830
Alignment:
Q  16 ataggctacaccaaaaagagtgttttacctttattagatgttatagatattcttgt 71  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  19832884 ataggctacacctaaa-gagtgttttacctttattagatgttatagatattcttgt 19832830  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 23192511 - 23192553
Alignment:
Q  156 cccgtctgtccgctttttctaccgcgctaaagtatgtatgtat 198  Q
    ||||||||||| |||||||||  ||||||||||||||||||||    
T  23192511 cccgtctgtccactttttctattgcgctaaagtatgtatgtat 23192553  T

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Target: scaffold0553 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 6575 - 6614
Alignment:
Q  155 acccgtctgtccgctttttctaccgcgctaaagtatgtat 194  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  6575 acccgtctgtccgctttttctactgcgctaacgtatgtat 6614  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 185
Target Start/End: Complemental strand, 19002799 - 19002769
Alignment:
Q  155 acccgtctgtccgctttttctaccgcgctaa 185  Q
    |||||||||||||||||||||||||||||||    
T  19002799 acccgtctgtccgctttttctaccgcgctaa 19002769  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 19214808 - 19214846
Alignment:
Q  156 cccgtctgtccgctttttctaccgcgctaaagtatgtat 194  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  19214808 cccgtctgtccgctttttctaccgcgctaacgcatgtat 19214846  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 19706986 - 19706944
Alignment:
Q  157 ccgtctgtccgctttttctaccgcgctaaagtatgtatgtatg 199  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||    
T  19706986 ccgtctgtccgctttttctactgcgctaaaatatgtatatatg 19706944  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 24552609 - 24552646
Alignment:
Q  157 ccgtctgtccgctttttctaccgcgctaaagtatgtat 194  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  24552609 ccgtctgtctgctttttctactgcgctaaagtatgtat 24552646  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 24558748 - 24558785
Alignment:
Q  157 ccgtctgtccgctttttctaccgcgctaaagtatgtat 194  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  24558748 ccgtctgtctgctttttctactgcgctaaagtatgtat 24558785  T

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