View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_21 (Length: 438)
Name: NF2766_low_21
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 37173446 - 37173170
Alignment:
| Q |
11 |
gagatgaatacataatagtaacatatacatatgatatgataatgggtgacaatagctacatgtgagagaatgaccacactacacaaatttttcttcaaat |
110 |
Q |
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| T |
37173446 |
gagatgaatacataatagtaacatacacatatgatatgatactgggtgacaatagctacatgtgagagaatgaccacactacacaaacttttcttcaaat |
37173347 |
T |
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| Q |
111 |
taatcagtgaagatgataaagaaacaaacaagtgtaagtgatcatccatacttgtgccagcagagtaacatgactaggcatcttctcattatataaaatc |
210 |
Q |
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| T |
37173346 |
taatcagtgaagatgataaagaaacaaacaagtgtaagtgatcatccatacttgtgccagcagagtaacatgactaggcatcttctcattatataaaatc |
37173247 |
T |
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| Q |
211 |
tacctctgtactcttttagtctctttccaaacctccaatctttctgacctctttttgacccacactcacccatttct |
287 |
Q |
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| T |
37173246 |
tacctctgtactcttttagtctctttccaaacctccaatctttctgacctctttttgacccacactcacccatttct |
37173170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 289 - 422
Target Start/End: Complemental strand, 37173135 - 37173002
Alignment:
| Q |
289 |
atctgttacgtttgtatgtaacctagctagttcgtgagatatatttgctacgtcctgcaggttttatatatagagagaagttaaaggatgttgaaataca |
388 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| |
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| T |
37173135 |
atctcttacgtttatatgtaacctagctagttcgtgagatatatttgctacgtcctgcaggttttatatatggagagaaattagaggatgttgaaataca |
37173036 |
T |
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| Q |
389 |
aacaaggtaaggaacacaaggattgtgtgtggtg |
422 |
Q |
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| T |
37173035 |
aacaaggcaaggaacacaaggattgtgtgtggtg |
37173002 |
T |
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