View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_23 (Length: 432)
Name: NF2766_low_23
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 413
Target Start/End: Complemental strand, 40458519 - 40458121
Alignment:
| Q |
11 |
tcgaagaatatggaaaataataagagaacattgtgataagggatatgatggtttgtgtgaggtcatatggataggagggagtttgttttcttgatttgga |
110 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40458519 |
tcgaagactatgagaaataataagagaacattgtgataagggatatgatggtttttgtgaggtcatatggataggagggagttggttttcttgatttgga |
40458420 |
T |
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| Q |
111 |
taactgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaactagaataccttgatgctcataatatactccctgtt |
210 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
40458419 |
taattgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaactagaatactttgatgctcctaatatactccctgtt |
40458320 |
T |
|
| Q |
211 |
ctatacgtgtgagaggaaggaaatatgcatggtaccaacttcagtttgagaaatgacaatggcaatatattcaaactaatttttgatggaaggacatcat |
310 |
Q |
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| T |
40458319 |
c--tacgtgt--gaggaaggaactatgcatggtaccagcttcaatttgagcaatgacaatggcaatatattcaaactaattattgatggaaggacatcat |
40458224 |
T |
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| Q |
311 |
tgtcttctaaaagaacgtaaaagcaattgtaatttatgaagactccatgataagagtgttgttacagtaggctgggtattagaactagtaaccgtcaaac |
410 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458223 |
tgtcttctaaaagaacgtaaaagcaattgtaatctatgaagactctatgataagagtgttgttacagtaggctgggtattagaactagtaaccgtcaaac |
40458124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 413
Target Start/End: Original strand, 43408393 - 43408791
Alignment:
| Q |
11 |
tcgaagaatatggaaaataataagagaacattgtgataagggatatgatggtttgtgtgaggtcatatggataggagggagtttgttttcttgatttgga |
110 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43408393 |
tcgaagactatgagaaataataagagaacattgtgataagggatatgatggtttttgtgaggtcatatggataggagggagttggttttcttgatttgga |
43408492 |
T |
|
| Q |
111 |
taactgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaactagaataccttgatgctcataatatactccctgtt |
210 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
43408493 |
taattgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaactagaatactttgatgctcctaatatactccctgtt |
43408592 |
T |
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| Q |
211 |
ctatacgtgtgagaggaaggaaatatgcatggtaccaacttcagtttgagaaatgacaatggcaatatattcaaactaatttttgatggaaggacatcat |
310 |
Q |
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| T |
43408593 |
c--tacgtgt--gaggaaggaactatgcatggtaccagcttcaatttgagcaatgacaatggcaatatattcaaactaattattgatggaaggacatcat |
43408688 |
T |
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| Q |
311 |
tgtcttctaaaagaacgtaaaagcaattgtaatttatgaagactccatgataagagtgttgttacagtaggctgggtattagaactagtaaccgtcaaac |
410 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408689 |
tgtcttctaaaagaacgtaaaagcaattgtaatctatgaagactctatgataagagtgttgttacagtaggctgggtattagaactagtaaccgtcaaac |
43408788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 413
Target Start/End: Original strand, 37667784 - 37668172
Alignment:
| Q |
11 |
tcgaagaatatggaaaataataagagaacattgtgataagggatatgatggtttgtgtgaggtcatatggataggagggagtttgttttcttgatttgga |
110 |
Q |
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||||||| ||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37667784 |
tcgaagactatagaaaataataggagaacattgtgataagggatatgatggtttgcgtgaggtcatatggataggagggagtttgttttcttgatttgga |
37667883 |
T |
|
| Q |
111 |
taactgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaactagaataccttgatgctcataatatactccctgtt |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37667884 |
taattgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaactagaataccttgatgctcataatatactccctgtt |
37667983 |
T |
|
| Q |
211 |
ctatacgtgtgagaggaaggaaatatgcatggtaccaacttcagtttgagaaatgacaatggcaatatattcaaactaatttttgatggaaggacatcat |
310 |
Q |
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| ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
37667984 |
c--tacgtgtgagaggaaggaaatatgcatggtacc------------agcaatgacaatgggaatatattcaaactaattattgatggaaggacatcat |
37668069 |
T |
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| Q |
311 |
tgtcttctaaaagaacgtaaaagcaattgtaatttatgaagactccatgataagagtgttgttacagtaggctgggtattagaactagtaaccgtcaaac |
410 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37668070 |
tgtcttctaaaagaacgtaaaagcaattgcaatctatgaagactccatgataagagtgttgttacagtaggctgggtattagaactagtaaccgtctaac |
37668169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 25004433 - 25004334
Alignment:
| Q |
313 |
tcttctaaaagaacgtaaaagcaattgtaatttatgaagactccatgataagagtgttgttacagtaggctgggtattagaactagtaaccgtcaaacct |
412 |
Q |
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||||||||||||| |||| |||||| ||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25004433 |
tcttctaaaagaaaaccaaagaaattgtgatttatgaagaatccatgataagagtgtggttac-gtaggctgggtattagaactagtaaccgtcaaacct |
25004335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 16474567 - 16474468
Alignment:
| Q |
313 |
tcttctaaaagaacgtaaaagcaattgtaatttatgaagactccatgataagagtgttgttacagtaggctgggtattagaactagtaaccgtcaaacct |
412 |
Q |
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||||||||||||| |||| |||||| ||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16474567 |
tcttctaaaagaaaaccaaagaaattgtgatttatgaagaatccatgataagagtgtggttac-gtaggctgggtattagaactagtaaccgtcaaacct |
16474469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 11968508 - 11968540
Alignment:
| Q |
19 |
tatggaaaataataagagaacattgtgataagg |
51 |
Q |
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| T |
11968508 |
tatggaaaataataagagaacattgtgataagg |
11968540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 22403242 - 22403195
Alignment:
| Q |
152 |
accaaactaatgaattcaaggaactagaataccttgatgctcataata |
199 |
Q |
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| T |
22403242 |
accaaactaatgaattcaaggaattagaataccttgatggtcataata |
22403195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 22403344 - 22403246
Alignment:
| Q |
25 |
aaataataagagaacattgtgataagggatatgatggtttgtgtgaggtcatatggataggagggagtttgttttcttgatttggataactgtattgatg |
124 |
Q |
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||||||||||||||| || ||||||||||| | |||| |||| | |||||| | |||||| ||||||||||||||||||||||| |||||| ||| |
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| T |
22403344 |
aaataataagagaactttttgataagggatg----gttttgcgtgaagccatatgcgtgggagggggtttgttttcttgatttggataattgtattaatg |
22403249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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