View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2766_low_27 (Length: 407)

Name: NF2766_low_27
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2766_low_27
NF2766_low_27
[»] chr1 (1 HSPs)
chr1 (85-400)||(40305605-40305916)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 85 - 400
Target Start/End: Original strand, 40305605 - 40305916
Alignment:
Q  85 aagggcaatttcggtataataacaataaatagaaagaaaaaagttacctttacttataattttttaacaactagatgagccaaaagtgttaactattatg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40305605 aagggcaatttcggtataataacaataaatagaaagaaaaaagttacctttacttgtaattttttaacaactagatgagccaaaagtgttaactattatg 40305704  T
Q  185 gtatattgtggtagtcttgtctcatggttagtttaattaaaccatggatgaatcaactctgtttttaaagtttgaaagcgtgtctttaatgtcacaagat 284  Q
    |||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40305705 gtatattgtggtagtcttatctcatggttagtttaa----accatggatgaatcaactctgtttttaaagtttgaaagcgtgtctttaatgtcacaagat 40305800  T
Q  285 aacataccatcagttgtgtcaagtttctgcagaacgtcagaaacttagttctatattagatttgattctacaaagcagcgaagcttctactcatttttag 384  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40305801 aacataccatcggttgtgtcaagtttctgcagaatgtcagaaacttagttctatattagatttgattctacaaagcagcgaagcttctactcatttttag 40305900  T
Q  385 aatatgacctatgcta 400  Q
    |||||| |||||||||    
T  40305901 aatatgccctatgcta 40305916  T

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