View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_3 (Length: 618)
Name: NF2766_low_3
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 5113427 - 5113085
Alignment:
| Q |
13 |
aatatcattatgtgtaagcatgcatggacccacattttctggccaatccccaaatgtcatctctcatcactctaaccaacacgtacccaccgtacaattc |
112 |
Q |
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| T |
5113427 |
aatatcattatgtgtaagcatgcatggacccacattttctggccaatccccaaatgtcatctctcatcactctaaccaacacgtacccaccgtacaattc |
5113328 |
T |
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| Q |
113 |
caagtgtccttttccccttctttcttacttcatgttgcctctttcttattggtcacttttcataactctttcatatacttaacctcttcatcaacttcat |
212 |
Q |
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| T |
5113327 |
caagtgtccctttccccttctttcttacttcatgttgcctctttcttattggtcacttttcataactctttcatat-----------------atttcat |
5113245 |
T |
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| Q |
213 |
agacacataacataacataacat---atagccacaca-tttgacaccgtaacctccctttcaatccaac-----acactatcttcctcctctttataact |
303 |
Q |
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| T |
5113244 |
agacacataacataacataacataacatagccacacattttgacaccgtaacctccctttcaatccaacatactacactatcctcctcctctttataacg |
5113145 |
T |
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| Q |
304 |
aaccactctttctcacatccttcttcactctcattgtatgtattgttaccttcctcacaaatataa |
369 |
Q |
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| T |
5113144 |
aacgactctttctcacatcc----tcactctcattgta--ttttgttaccttcctcacaaaaataa |
5113085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 400 - 599
Target Start/End: Complemental strand, 5113086 - 5112887
Alignment:
| Q |
400 |
aacaatgatcaaaaccttaaatccatacccaaatccagcaaaaacagctgagattatgtcaaggtatagaccaatagcaccaaagccagaaacatgttca |
499 |
Q |
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| T |
5113086 |
aacaatgatcaaaaccttaaatccatacccaaatccagcaaaaacagctgagattatgtcaaggtatagaccaatagcaccaaagccagaaacatgttca |
5112987 |
T |
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| Q |
500 |
agtaacaattcaacgagtgatggatcttcatcatcaaactcactttctcaaaagatcaaacaatctccttaccttaggaatctttggccacagttacaag |
599 |
Q |
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| T |
5112986 |
agtaacaattcaactagtgatggatcttcatcatcaaactcactttctcaaaagatcaaacaatctccttaccttaggaatctttggccacagttacaag |
5112887 |
T |
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