View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_30 (Length: 387)
Name: NF2766_low_30
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 371
Target Start/End: Complemental strand, 10218998 - 10218648
Alignment:
| Q |
20 |
atttaaaggcaacgatacaatgataactggtaataagttttgtaacaagaacaattggcacaaacggtctattgatatttcaataaaaagaataaaagtg |
119 |
Q |
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| T |
10218998 |
atttaaaggcaacgatacaatgataactgataataagttttgtaacaagaacaattggcacaaacgatctattgatatttcaataaaaagaataaaagtg |
10218899 |
T |
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| Q |
120 |
gccggctannnnnnnnnnnnatatggacaataaataccgaaattattaagtcagacgctatgatgaacatttgaacttcgactatttcatttg-gtatgt |
218 |
Q |
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| T |
10218898 |
gccggctattttttt-----atatgaacaataaatgtcgaaattgttaagtcagacattatggtgagcattcgaacttcgactatttcatttgtgtatgt |
10218804 |
T |
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| Q |
219 |
gagtttttaacagtgttgtcgt---ttcttttatttaccaaacnnnnnnntcatcaacaaaaagtccatataatcacattaaattgtgaatttgtgattc |
315 |
Q |
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| T |
10218803 |
gagtttttaatagcgttgtcgtcgtttcttttatttaccaaacaaaaaaatcatcaacaaaaagtccatataatcacattaaattgtgaatttgtgattc |
10218704 |
T |
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| Q |
316 |
actttggctccaatgctagctcttaccactagaatttgaacgcatatgcttcttct |
371 |
Q |
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| T |
10218703 |
actttggctccaatgctagctcttaccactagaatttgaacgcatatgcttcttct |
10218648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 11050971 - 11050852
Alignment:
| Q |
9 |
catcatcatgaatttaaaggcaa-cgatacaatgataactggtaataagttttgtaacaagaacaattggcacaaacggtctattgatatttcaataaaa |
107 |
Q |
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| T |
11050971 |
catcatcatgaattaaaagacaaaccatacaatggtaactggtaataagttttgtaacaagaacaattggcacaaagagtctattgatgtttcaataaaa |
11050872 |
T |
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| Q |
108 |
agaataaaagtggccggcta |
127 |
Q |
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| T |
11050871 |
agaataaaagtggccggcta |
11050852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 288
Target Start/End: Complemental strand, 11050729 - 11050630
Alignment:
| Q |
189 |
tttgaacttcgactatttcatttg-gtatgtgagtttttaacagtgttgtcgtttcttttatttaccaaacnnnnnnntcatcaacaaaaagtccatata |
287 |
Q |
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| T |
11050729 |
tttgaattccgactatttcatttgtgtatgtgagtttttaacaactttgt-gtttcttttatctaccaaataaaaatatcatcaataaaaagtccatata |
11050631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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