View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2766_low_31 (Length: 382)
Name: NF2766_low_31
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_31 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 28 - 382
Target Start/End: Original strand, 32907033 - 32907388
Alignment:
| Q |
28 |
cagaaaaagataaatagcttctgtaaggatcggtaaatttaacaaatttctaaaatatcaatttagcccatttggtcannnnnnnncaaatttttagaga |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
32907033 |
cagaaaaagataaatagcttctgtaaggatcggtaaatttaacaaatttctaaaatatcaatttagcccatttggtcatttttttttcaaattttagaga |
32907132 |
T |
|
| Q |
128 |
ttttaggtttactctgatgcaataaaaaactatagaagtcaatatgatattcttgcataggataaacctaacatctttaaaagtatagtgctagatttga |
227 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32907133 |
ttttatgtttactctgatgcaataaaaaactatagaagtcaatatgatattcttgcataggataaacctaacatctttaaaagtatagtgctagatttga |
32907232 |
T |
|
| Q |
228 |
aagggnnnnnnn-ttattgttgtttattcaatttaatggacttaattattgctatttttgaaattttaggcattaagttaacacccttacaaattgaagt |
326 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32907233 |
aagggaaaaaaaattattgttgtttattcaatttaatggacttaattattgctatttttgaaattttaggcattaaattaacacccttacaaattgaagt |
32907332 |
T |
|
| Q |
327 |
gtgtttgtatatgtatatttgagttgaatttgtggtgattggattttgaaagagac |
382 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32907333 |
gtgtgtgtatatgtatatttgaattgaatttgtggtgattggattttgaaagagac |
32907388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University