View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_33 (Length: 355)
Name: NF2766_low_33
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 30412006 - 30412330
Alignment:
| Q |
16 |
ataaagcataatacctacaattttactcctaacctttttctcattgtcatttttgtgaagattacctaaccaaggagagtgatgtatacaattttggggt |
115 |
Q |
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| T |
30412006 |
ataaagcataatacctacaattttactcctaacctttttctcattgtcatttttgtgaagattacctaaccaaggagaatgatgtatacaattttggggt |
30412105 |
T |
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| Q |
116 |
tgttctcctggaaattatgtcaggcaaacgtgcagtggataaaaacatgccgcttcaggaacaaaatttagttgaatgggccaagccattactcaacagc |
215 |
Q |
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| T |
30412106 |
tgttctcctggaaattatgtcaggcaaacgtgcagtggataaaaacatgccgcttcaggaacaaaatttggttgaatgggccaagccattactcaacaac |
30412205 |
T |
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| Q |
216 |
aaacataaaatctctcaagttatggatgttcgtatagaaggtgaatactcatcgcgtgatgcaatgaaattagctcatattgtaattcaatgtctgtctg |
315 |
Q |
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| T |
30412206 |
aaacataaaatctctcaagttatggatgttcgtatagaaggtgaatactcatcgcgtgatgcaatgaaattagctcatattataattcaatgtctgtctg |
30412305 |
T |
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| Q |
316 |
aaaaaccagaatatagaccaaaaat |
340 |
Q |
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| T |
30412306 |
aaaaaccagaatatagaccaaaaat |
30412330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 65 - 337
Target Start/End: Original strand, 30423209 - 30423481
Alignment:
| Q |
65 |
tttttgtgaagattacctaaccaaggagagtgatgtatacaattttggggttgttctcctggaaattatgtcaggcaaacgtgcagtggataaaaacatg |
164 |
Q |
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| T |
30423209 |
tttttgtgaaggtcacctaactaaaaagagcgatgtctacagtttcggggttgttctcctagaaattatgtcaggcaagcgtgtattggataaaaaccga |
30423308 |
T |
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| Q |
165 |
ccgcttcaggaacaaaatttagttgaatgggccaagccattactcaacagcaaacataaaatctctcaagttatggatgttcgtatagaaggtgaatact |
264 |
Q |
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| T |
30423309 |
ccgtctggagagcatgatttagttgcatgggccaagccattactcatgagcaaacgtaagatttctcaagttatggatgctcgtatagaaggccaatact |
30423408 |
T |
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| Q |
265 |
catcgcgtgatgcaatgaaattagctcatattgtaattcaatgtctgtctgaaaaaccagaatatagaccaaa |
337 |
Q |
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| T |
30423409 |
catcgcgtgaagcaattaaagtagctcatgttgcaattcgatgtctgtcggcagaacaaaaatatagaccaaa |
30423481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 30409522 - 30409663
Alignment:
| Q |
22 |
cataatacctacaattttactcctaacctttttctcattgtcatttt-tgtgaagattacctaaccaaggagagtgatgtatacaattttggggttgttc |
120 |
Q |
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| T |
30409522 |
cataaaacttacaattttacttctaatctttttcccattgcctttttttgtgaaggtcacctaactaaagagagtgatttatacaattttggggttgttc |
30409621 |
T |
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| Q |
121 |
tcctggaaattatgtcaggcaaacgtgcagtggataaaaaca |
162 |
Q |
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| T |
30409622 |
tcttggaaattatgtcaggcaaacatgcattagataacaaca |
30409663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 314
Target Start/End: Original strand, 30405417 - 30405704
Alignment:
| Q |
28 |
acctacaattttactcctaacct-ttttctcattgtcatttttgtgaagattacctaaccaaggagagtgatgtatacaattttggggttgttctcctgg |
126 |
Q |
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| T |
30405417 |
acctacaattttattcctaacatcttttcgaattgtcttttttgtgaaggtcacttgaccaaaaagagtgatgtatacggttttggggttgttctcctgg |
30405516 |
T |
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| Q |
127 |
aaattatgtcaggcaaacgtgcagtggataaaaacatgccgcttcaggaacaaaatttagttgaatgggccaagccattactcaacagcaaacataaaat |
226 |
Q |
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| T |
30405517 |
aaattatgtcgggaaaacgtgcattggattataacaggccacgatgggaaaatgatttagttgtgtgggcgcggccattacttatcaacaaagaaaagat |
30405616 |
T |
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| Q |
227 |
ctctcaagttatggatgttcgtatagaaggtgaatactcatcgcgtgatgcaatgaaattagctcatattgtaattcaatgtctgtct |
314 |
Q |
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| T |
30405617 |
ctatcaagtcatggattcctgtatagaaggtcaatactcgccgcatgaagcaatggaggtggctcgtattgcaattcaatgtctgtct |
30405704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 30402395 - 30402453
Alignment:
| Q |
91 |
agagtgatgtatacaattttggggttgttctcctggaaattatgtcaggcaaacgtgca |
149 |
Q |
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| T |
30402395 |
agagtgatatatacggttttggggttcttctcctggaaattatgtcaggaaaacgtgca |
30402453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 30409691 - 30409738
Alignment:
| Q |
245 |
tcgtatagaaggtgaatactcatcgcgtgatgcaatgaaattagctca |
292 |
Q |
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| T |
30409691 |
tcgtatagaaggacaatactcatcgagtgaagcaatgaaattagctca |
30409738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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