View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2766_low_37 (Length: 335)

Name: NF2766_low_37
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2766_low_37
NF2766_low_37
[»] chr4 (1 HSPs)
chr4 (23-317)||(27301974-27302268)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 23 - 317
Target Start/End: Original strand, 27301974 - 27302268
Alignment:
Q  23 ttattggagcgtgattttttatagtgtaaaatctatcagaagataaggttcaatcgacattttgttcatcgaatgttatctttcgataagcttattttaa 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27301974 ttattggagcgtaattttttatagtgtaaaatctatcagaagataaggttcaatcgacattttgttcattgaatgttatctttcgataagcttattttaa 27302073  T
Q  123 aggttgatcaacaaatatcgaacaaaagacaaatttgttgaactaacttaagacccaaatacctacatctccatttcttggcaaattactcaaaccaccc 222  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27302074 aggttgatcaacaaatatccatcaaaagacaaatttgttgaactaacctaagacccaaatacctacatctccatttctaggcaaattactcaaaccaccc 27302173  T
Q  223 tagaatccacatgaacctcaacctatgaaaaccataacttctagacaatcacaaactttctagaacatctcataactcaaatacatgcccacttc 317  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  27302174 gagaatccacatgaacctcaacctatgaaaaccataacttctagacaatcacaaactttccggaacatctcataactcaaatacatgcccacttc 27302268  T

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