View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2766_low_38 (Length: 331)
Name: NF2766_low_38
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 11542275 - 11542593
Alignment:
| Q |
1 |
ccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11542275 |
ccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagt |
11542374 |
T |
|
| Q |
101 |
cctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatggagaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
11542375 |
cctcggcggagtactgatgagaccataagcaattgccaaacattcactatgatactgcaaagccttttctttttcctcttcatcaatgtcatggagaaca |
11542474 |
T |
|
| Q |
201 |
tatctcgtatcaggaacataacctgcttccctcatctgcccggccaaacttctcaatttcacatcactctcttctttatacggcatattacaccgatatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11542475 |
tatctcgtatcaggaacataacctgcttccctcatctgcccggtcaaacttctcaatttcacatcactctcttctttatacggcatattacaccgatatt |
11542574 |
T |
|
| Q |
301 |
cacttactctattcatctc |
319 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
11542575 |
cacttactctattcttctc |
11542593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 34614820 - 34615138
Alignment:
| Q |
1 |
ccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
34614820 |
ccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagagtagt |
34614919 |
T |
|
| Q |
101 |
cctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatggagaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34614920 |
cctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatactgcaaagccttttccttttcctcctcatcaatgtcatggagaacg |
34615019 |
T |
|
| Q |
201 |
tatctcgtatcaggaacataacctgcttccctcatctgcccggccaaacttctcaatttcacatcactctcttctttatacggcatattacaccgatatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
34615020 |
tatctcgtatcaggaacataacctgcttccctcatctgcccggtcaaacctctcaatttcacatcaccctcttctttatacggcatattacaccgatatt |
34615119 |
T |
|
| Q |
301 |
cacttactctattcatctc |
319 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
34615120 |
cacttactctattcttctc |
34615138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 34757366 - 34757678
Alignment:
| Q |
1 |
ccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34757366 |
ccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagagtagt |
34757465 |
T |
|
| Q |
101 |
cctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatggagaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34757466 |
cctcggcggagtactgatgagaccataagcaattgccaaacattcactatgatactgcaaagccttttctttttcctcctcatcaatgtcatggagaacg |
34757565 |
T |
|
| Q |
201 |
tatctcgtatcaggaacataacctgcttccctcatctgcccggccaaacttctcaatttcacatcactctcttctttatacggcatattacaccgatatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
34757566 |
tatctcgtatcaggaacataacctgcttccctcatctgcccggtcaaacctctcaatttctcatcatcctcttcttcatacggcatattacaccgatatt |
34757665 |
T |
|
| Q |
301 |
cacttactctatt |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34757666 |
cacttactctatt |
34757678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 34742259 - 34742578
Alignment:
| Q |
1 |
ccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagt |
100 |
Q |
| |
|
||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34742259 |
ccctcacaatgagtttcattcccacaatcttagacatgaatttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcatagt |
34742358 |
T |
|
| Q |
101 |
cctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatggagaaca |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||| || ||||||||| |||| || || || ||||||||||||||||| |||||||| || |
|
|
| T |
34742359 |
ccttggcggagtactgatgagaccataagctattgccaaacgctcgctatgatatcgcaaggctttctccttttcctcctcatcaatatcatggagtacg |
34742458 |
T |
|
| Q |
201 |
tatctcgtatcaggaacataacctgcttccctcatctgcccggccaaacttctcaatttcacatcactctcttc-tttatacggcatattacaccgatat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| | ||||| |||||||||||||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
34742459 |
tatctcgtatcaggaacataacctgcttccctaatctgcccagtcaaacctctcaatttcacatcattgtcttcttttatacggcatattacaccgatat |
34742558 |
T |
|
| Q |
300 |
tcacttactctattcatctc |
319 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
34742559 |
tcacttactctattcttctc |
34742578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 33779057 - 33779271
Alignment:
| Q |
6 |
acaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagtcctcg |
105 |
Q |
| |
|
||||| || ||||| || |||||| | |||||||| ||||| |||||||||||||| ||||| | ||| || ||||||||||| ||||| | || || | |
|
|
| T |
33779057 |
acaatcagttccctccctacaatcctagacatgatcttgatggcattgtgacagtcaccacagacacgaaggttcttgataatcctaagaggtgttctag |
33779156 |
T |
|
| Q |
106 |
gcggagtactgatgagaccataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatggagaacatatct |
205 |
Q |
| |
|
| |||||||| || |||||||| |||||||| | ||| ||||| || || |||| |||| || ||| | |||| |||||||||||| ||||||||||| |
|
|
| T |
33779157 |
gaggagtactaataagaccataggcaattgctagacgctcactgtggtagagcaaggcctgctcctttgcttcctgatcaatgtcatgaagaacatatct |
33779256 |
T |
|
| Q |
206 |
cgtatcaggaacata |
220 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33779257 |
tgtatcaggaacata |
33779271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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