View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_4 (Length: 600)
Name: NF2766_low_4
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 11 - 583
Target Start/End: Original strand, 52824849 - 52825421
Alignment:
| Q |
11 |
cacagacaaaccaactgcatgttgatggagcaggacgagttgcctctctgcaagaatcaaccaaaatggtggatcacccccacatgcaagaccgtgacaa |
110 |
Q |
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| T |
52824849 |
cacagacaaaccaactgcatgttgatggagcaggacgagttgcctctctgcaagaatcaaccaaaatggtggatcacccccacatgcaagaccgtgacaa |
52824948 |
T |
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| Q |
111 |
cggctgtcacatagcacaaatatgtcctggatatttgagaaaagggaagtcatgcataccttcagggtttgttgctacaatcatagagcaacaaccctta |
210 |
Q |
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| T |
52824949 |
cggctgtcacgtagcacaaatatgtcctggatatttgagaaaagggaagtcatgcataccttcagggtttgttgctacaatcatagagcaacaaccctta |
52825048 |
T |
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| Q |
211 |
actacttgtaatcaattcgaccttcttttctaccatgcaaatgatgaggaattttttcctctgggtctatactctgtccttcttcatgagaatttctagt |
310 |
Q |
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| T |
52825049 |
actacttgtaatcaattcgaccttcttttctaccatgcaaatgatgaggaattttttcctctgggtctatactctgtccttcttcatgagaatttctagt |
52825148 |
T |
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| Q |
311 |
aacaattcttaaagggtgtgcttctgtgttgaacacccattcatcgagagagataacggaaggtggtgaaaacaagagatagaggtacttgagggtttct |
410 |
Q |
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| T |
52825149 |
aacaattcttaaagggtgtgcttctgtgttgaacacccattcatcgagagagataacggaaggtggtgaaaacaagagatagaggtacttgagggtttct |
52825248 |
T |
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| Q |
411 |
gcaaggaagaagctctgcatcatgtcatctttgtcaccagtattcacctgggtattcaacaatggtttagttatgttccgtagtgcacaagttacaatag |
510 |
Q |
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| T |
52825249 |
gcaaggaagaagctctgcatcatgtcatctttgtcacctgtattcacctgggtattcaacaatggtttagttatgttccgtagtgcacaagttacaatag |
52825348 |
T |
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| Q |
511 |
gaaaaccataatttttataatgcataagaaaatattcctcataacgaacaaaaaatgaatctatgaacccaat |
583 |
Q |
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| T |
52825349 |
gaaaaccataatttttataatgcataagaaaatattcctcataacgaacaaaaaatgaatctatgaacccaat |
52825421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 1405329 - 1405286
Alignment:
| Q |
312 |
acaattcttaaagggtgtgcttctgtgttgaacacccattcatc |
355 |
Q |
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| T |
1405329 |
acaatcctcaaagggtgtgcttctgtgttgaatacccattcatc |
1405286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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