View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_42 (Length: 307)
Name: NF2766_low_42
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_42 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 7553813 - 7554122
Alignment:
| Q |
1 |
ttgattttttacgtgaataattaattactcactacttgtcaaaaacaaaattaattactcactat---atgatatttatcctcaaaaatatctacaaaat |
97 |
Q |
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| T |
7553813 |
ttgattttttacgtgaataattaattactcactacttgtcaaaaacaaaattaattactcactattatatgatatttatcctcaaaaatatctacaaaat |
7553912 |
T |
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| Q |
98 |
ctagtggtcaattcaattagctaatacaatttgggatttcaaatcacatgcacactaccaaaaacagaaaactctcttgcagatagtaaaatggataaat |
197 |
Q |
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| T |
7553913 |
ctagtggtcaattcaattagctaatacaatttgggatttcaaatcacatgcacactaccaaaaacagaaaactctcttgcagataataaaatggataaat |
7554012 |
T |
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| Q |
198 |
aaactcttagttgcagcaacaaaaagtatataggttaaagttttgtccaaaaacgaatatcattatgtaattgcaccatccaacaacataaaagaaacac |
297 |
Q |
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| T |
7554013 |
aaactcctagttgcagcaacaaaaagtatataggttaaagttttgtccaaaaacgaatatcattatgtaattgcaccatccaacaacataaaagaaacac |
7554112 |
T |
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| Q |
298 |
tacagagaat |
307 |
Q |
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| T |
7554113 |
tacagagaat |
7554122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 8047618 - 8047572
Alignment:
| Q |
157 |
aaaaacagaaaactctcttgcagatagtaaaatggataaataaactc |
203 |
Q |
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| T |
8047618 |
aaaaacagaaaactctcttgcatataataaaatggataaataaactc |
8047572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 157
Target Start/End: Complemental strand, 48250053 - 48250023
Alignment:
| Q |
127 |
tttgggatttcaaatcacatgcacactacca |
157 |
Q |
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| T |
48250053 |
tttgggatttcaaatcacatgcacactacca |
48250023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 45056046 - 45056004
Alignment:
| Q |
264 |
gtaattgcaccatccaacaacataaaagaaacactacagagaa |
306 |
Q |
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| T |
45056046 |
gtaattgcaccatccaacaacataaaagaaaccctagagagaa |
45056004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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