View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_47 (Length: 280)
Name: NF2766_low_47
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 34420254 - 34420162
Alignment:
| Q |
11 |
tccaagaatatcagcaatcatctcctcagtttcctgaacaacaatttcacaataaatactagaccaacagaagaacaattcttacatttaaga |
103 |
Q |
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| T |
34420254 |
tccaagaacatcagcaatcagctcctcagtttcctgaacaacaatttcacaataaatactagaccaacattagaacaattcttacatttaaga |
34420162 |
T |
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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 34424390 - 34424311
Alignment:
| Q |
11 |
tccaagaatatcagcaatcatctcctcagtttcctgaacaacaatttcacaataaatactagaccaacagaagaacaatt |
90 |
Q |
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|||||||| ||| |||| || |||||||||||||||||||||||||||| | |||||||| |||||| |||||||||||| |
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| T |
34424390 |
tccaagaacatctgcaaccacctcctcagtttcctgaacaacaatttcatagtaaatacttgaccaagagaagaacaatt |
34424311 |
T |
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