View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2766_low_48 (Length: 277)
Name: NF2766_low_48
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_48 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 35814226 - 35814457
Alignment:
| Q |
8 |
tgagaagaaaagcactaagacataggccccacgttaggtcctttcaaaagaccacaagtcgtgattttcatctttgtttctccttctccactgcacc--- |
104 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35814226 |
tgagaagaaaagcacttagacataggccccacgttaggtcctttcaaaagaccacaagtcgtgattttcatctttgtttctccttctccactgcaccaac |
35814325 |
T |
|
| Q |
105 |
---aacaccaacaccaatacaatacattcattctttcaccttaccctgtcaaccacaaaacatgtcttcttcctcttcccaaatcgaaaactcttctctt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35814326 |
accaacaccaacaccaatacaatacattcattctttcaccttaccctgtcaaccacaaaacatgtcttcttcctcttcccaaatcgaaaactcttctctt |
35814425 |
T |
|
| Q |
202 |
cacgcatcttcttccaaatccaatcatcatca |
233 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
35814426 |
cacccatcttcttccaaatccaatcatcatca |
35814457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University