View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2766_low_50 (Length: 267)

Name: NF2766_low_50
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2766_low_50
NF2766_low_50
[»] chr5 (9 HSPs)
chr5 (1-201)||(37596342-37596542)
chr5 (1-193)||(37535095-37535287)
chr5 (1-147)||(37720090-37720236)
chr5 (1-134)||(37825901-37826046)
chr5 (1-86)||(37395858-37395943)
chr5 (35-89)||(37642083-37642137)
chr5 (17-78)||(37388633-37388695)
chr5 (98-134)||(37641909-37641945)
chr5 (162-202)||(37713612-37713652)
[»] chr3 (8 HSPs)
chr3 (116-197)||(14555032-14555113)
chr3 (201-261)||(27149964-27150024)
chr3 (201-264)||(5165363-5165426)
chr3 (201-264)||(8435433-8435496)
chr3 (201-267)||(3804520-3804586)
chr3 (1-57)||(14557208-14557264)
chr3 (201-236)||(3817769-3817804)
chr3 (200-234)||(27149097-27149131)
[»] chr6 (1 HSPs)
chr6 (201-264)||(31742845-31742908)
[»] chr7 (2 HSPs)
chr7 (200-238)||(48119330-48119368)
chr7 (201-261)||(48119950-48120010)
[»] scaffold0221 (1 HSPs)
scaffold0221 (198-234)||(11026-11062)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 37596542 - 37596342
Alignment:
Q  1 cattggctcaatttattttcttaatttattttaaattaaaggtaactcttcattcaactttagaattaatttgttaaagtaattttatattactttgctc 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  37596542 cattggctcaatttattttcttaatttcttttaaattaaaggtaactcttccttcaactttagaattaatttgttaaagtaattttatattactttactc 37596443  T
Q  101 aaaaataaattcataaatgtttggttgaccctacatatcttaattatgcaccacttaattatacaccaaatgtttttatggatactaatgaattaattaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37596442 aaaaataaattcataaatgtttggttgaccctacatatcttaattatgcaccacttaattatacaccaaatgtttgtatggatactaatgaattaattaa 37596343  T
Q  201 t 201  Q
    |    
T  37596342 t 37596342  T

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Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 37535287 - 37535095
Alignment:
Q  1 cattggctcaatttattttcttaatttattttaaattaaaggtaactcttcattcaactttagaattaatttgttaaagtaattttatattactttgctc 100  Q
    ||||||||||||| |||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37535287 cattggctcaattaattttcttaatttcatttaaattaaagataactcttcattcaactttagaattaatttgttaaagtaattttatattactttgctc 37535188  T
Q  101 aaaaataaattcataaatgtttggttgaccctacatatcttaattatgcaccacttaattatacaccaaatgtttttatggatactaatgaat 193  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37535187 aaaaataaattgataaatgtttggttgaccctacatatcttaattatgcaccacttaattatacaccaaatgtttgtatggatactaatgaat 37535095  T

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Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 37720236 - 37720090
Alignment:
Q  1 cattggctcaatttattttcttaatttattttaaattaaaggtaactcttcattcaactttagaattaatttgttaaagtaattttatattactttgctc 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  37720236 cattggctcaatttattttcttaatttcttttaaattaaaggtaactcttccttcaactttagaattaatttgttaaagtaattttatattactttactc 37720137  T
Q  101 aaaaataaattcataaatgtttggttgaccctacatatcttaattat 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37720136 aaaaataaattcataaatgtttggttgaccctacatatcttaattat 37720090  T

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Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 37826046 - 37825901
Alignment:
Q  1 cattggctcaatttattttcttaatttattttaaattaaaggtaactcttcattcaactttagaattaatttgttaaagtaatttt------------at 88  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||    
T  37826046 cattggctcaatttattttcttaatttcttttaaattaaaggtaactcttcattcaactttagaattaatttgttaaagtaattttttcaataaaaaaat 37825947  T
Q  89 attactttgctcaaaaataaattcataaatgtttggttgaccctac 134  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||    
T  37825946 attactttactcaaaaagaaattcataaatgtttggttgaccctac 37825901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 37395858 - 37395943
Alignment:
Q  1 cattggctcaatttattttcttaatttattttaaattaaaggtaactcttcattcaactttagaattaatttgttaaagtaatttt 86  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37395858 cattggctcaatttattttcttaatttcttttaaattaaaggtaactcttccttcaactttagaattaatttgttaaagtaatttt 37395943  T

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Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 37642137 - 37642083
Alignment:
Q  35 attaaaggtaactcttcattcaactttagaattaatttgttaaagtaattttata 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37642137 attaaaggtaactcttcattcaactttagaattaatttgttaaagtaattttata 37642083  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 37388633 - 37388695
Alignment:
Q  17 tttcttaatttattttaaattaaaggtaa-ctcttcattcaactttagaattaatttgttaaa 78  Q
    ||||||||||| ||  ||||||||||||| |||||||||||||||||||||||||||||||||    
T  37388633 tttcttaatttcttaaaaattaaaggtaaactcttcattcaactttagaattaatttgttaaa 37388695  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 37641945 - 37641909
Alignment:
Q  98 ctcaaaaataaattcataaatgtttggttgaccctac 134  Q
    |||||||||||||||||||||||||||||||||||||    
T  37641945 ctcaaaaataaattcataaatgtttggttgaccctac 37641909  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 37713652 - 37713612
Alignment:
Q  162 tacaccaaatgtttttatggatactaatgaattaattaata 202  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  37713652 tacaccaaatgtttgtatggatactaatgaattaattaata 37713612  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 14555113 - 14555032
Alignment:
Q  116 aatgtttggttgaccctacatatcttaattatgcaccacttaattatacaccaaatgtttttatggatactaatgaattaat 197  Q
    |||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14555113 aatgattggttgaccctacctatcctaattatgcaccacttaattatacaccaaatgtttgtatggatactaatgaattaat 14555032  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 27150024 - 27149964
Alignment:
Q  201 tactccctccggtcctttataaaagagacaatttgagaaaatcacacagaccaaggaaagg 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27150024 tactccctccggtcctttataaaagagacaatttgagaaaatcacacagaccaaggaaagg 27149964  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 5165426 - 5165363
Alignment:
Q  201 tactccctccggtcctttataaaagagacaatttgagaaaatcacacagaccaaggaaaggtat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  5165426 tactccctccggtcctttataaaagagacaatttgagaaaatcacaccgaccaaggaaatgtat 5165363  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 8435496 - 8435433
Alignment:
Q  201 tactccctccggtcctttataaaagagacaatttgagaaaatcacacagaccaaggaaaggtat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||    
T  8435496 tactccctccggtcctttataaaagagacaatttgagaaaatcacacagactaaagaaatgtat 8435433  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 3804520 - 3804586
Alignment:
Q  201 tactccctccggtcctttataaaagagacaatttgagaaaatcacacagaccaaggaaaggtatctt 267  Q
    |||| |||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  3804520 tacttcctccgatcctttataaaagagacaatttgagaaaatcacagagaccaaagaaaggtatctt 3804586  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14557264 - 14557208
Alignment:
Q  1 cattggctcaatttattttcttaatttattttaaattaaaggtaactcttcattcaa 57  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  14557264 cattggctcaaattattttcttaatttcttttaaattaaaggtaactcttcattcaa 14557208  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 236
Target Start/End: Complemental strand, 3817804 - 3817769
Alignment:
Q  201 tactccctccggtcctttataaaagagacaatttga 236  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3817804 tactccctccgatcctttataaaagagacaatttga 3817769  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 27149097 - 27149131
Alignment:
Q  200 atactccctccggtcctttataaaagagacaattt 234  Q
    |||||||||||||||||||||| ||||||||||||    
T  27149097 atactccctccggtcctttatacaagagacaattt 27149131  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 31742908 - 31742845
Alignment:
Q  201 tactccctccggtcctttataaaagagacaatttgagaaaatcacacagaccaaggaaaggtat 264  Q
    |||||| || ||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||    
T  31742908 tactccatctggtcctttatagaagagacaatttgagaaaatcacacagaccaagaaaatgtat 31742845  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 48119330 - 48119368
Alignment:
Q  200 atactccctccggtcctttataaaagagacaatttgaga 238  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  48119330 atactccctccggtcctttttataagagacaatttgaga 48119368  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 48120010 - 48119950
Alignment:
Q  201 tactccctccggtcctttataaaagagacaatttgagaaaatcacacagaccaaggaaagg 261  Q
    ||||||||||||| |||| || ||||||||| ||| || | ||||||||||||| ||||||    
T  48120010 tactccctccggttctttttataagagacaaattgggagattcacacagaccaaagaaagg 48119950  T

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Target: scaffold0221 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 11026 - 11062
Alignment:
Q  198 taatactccctccggtcctttataaaagagacaattt 234  Q
    ||||||||||||||||||||| || ||||||||||||    
T  11026 taatactccctccggtcctttttacaagagacaattt 11062  T

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