View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2766_low_52 (Length: 264)
Name: NF2766_low_52
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_52 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 30837439 - 30837675
Alignment:
| Q |
16 |
attatttgggtgcaacaatatatgctcctatagtttctcatcttttatttgtgaatgactatttttactttttaaagttaagccttctaaagcgacaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30837439 |
attatttgggtgcaacaatatatgctcctatagtttctcaccttttatttgtgaatgactatttttactttttaaagttaagccttctaaagcgacaatt |
30837538 |
T |
|
| Q |
116 |
atgacatattataacggtgtatgaacaaacatcaggacaagcaattaattttcaaaagtcagaatttttcttcagcaggtatttgacccaagcaatgcaa |
215 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30837539 |
atgacatattatagcggtgtatgaacaaatatcaggacaagcaattaatttccaaaagtcagaatttttcttcaacaggtatttgacccaagcaatgcaa |
30837638 |
T |
|
| Q |
216 |
aatagcattacgaacattcttggggtgcaagctattc |
252 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30837639 |
aattgcattacgaacattcttggggtgcaagctattc |
30837675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University