View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_55 (Length: 258)
Name: NF2766_low_55
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_55 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 8491537 - 8491293
Alignment:
| Q |
14 |
acatcatcacggaggaggtaaccaccagcatattggacatgctagtactgttaggcgtgatgctcctcctggacagaaggttggtctcattgctgctaag |
113 |
Q |
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| T |
8491537 |
acatcctcacggaggaggtaaccaccagcatattggacatgctagtactgttaggcgtgacgctcctcctggacagaaggttggtctcattgctgctaag |
8491438 |
T |
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| Q |
114 |
agaactggtcgtctcaggggacaagctgcttccgctgctgctaaggctgattaacttataagactatttgaagagattcttagggttttattttgttgca |
213 |
Q |
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| T |
8491437 |
agaactggtcgtctcaggggacaagctgcttccgctgctgctaaggctgattaacttattagactatttgaagagattcttagggttttattttgttgca |
8491338 |
T |
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| Q |
214 |
agattttgtaattttgtttgattccttgtttgttcgaaactactt |
258 |
Q |
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| T |
8491337 |
agattttgaaattttgtttgattccttgtttgttcgaaactactt |
8491293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 29063169 - 29063291
Alignment:
| Q |
21 |
cacggaggaggtaaccaccagcatattggacatgctagtactgttaggcgtgatgctcctcctggacagaaggttggtctcattgctgctaagagaactg |
120 |
Q |
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|||||||||||||| ||||| |||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
29063169 |
cacggaggaggtaatcaccaacatattggtcatgcgagtactgtcagacgtgatgctcctcctggacagaaggttggtctcattgctgccaagaggactg |
29063268 |
T |
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| Q |
121 |
gtcgtctcaggggacaagctgct |
143 |
Q |
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| T |
29063269 |
gtcgtctcaggggtcaagctgct |
29063291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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