View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2766_low_6 (Length: 584)

Name: NF2766_low_6
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2766_low_6
NF2766_low_6
[»] chr4 (7 HSPs)
chr4 (9-397)||(45858761-45859142)
chr4 (51-399)||(45876731-45877069)
chr4 (64-195)||(56208539-56208670)
chr4 (57-201)||(47293456-47293600)
chr4 (63-201)||(55705881-55706019)
chr4 (68-176)||(54304249-54304357)
chr4 (307-389)||(56208678-56208760)
[»] chr5 (3 HSPs)
chr5 (56-201)||(35854542-35854687)
chr5 (125-201)||(35802504-35802580)
chr5 (68-199)||(10521303-10521434)
[»] chr2 (2 HSPs)
chr2 (65-206)||(24357450-24357591)
chr2 (289-396)||(24357269-24357376)
[»] chr8 (2 HSPs)
chr8 (63-202)||(7972083-7972222)
chr8 (68-201)||(7961718-7961851)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 9 - 397
Target Start/End: Original strand, 45858761 - 45859142
Alignment:
Q  9 atcatcaaataaatcaacagacatcaaaataaaggtgttcttaaatcaacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcac 108  Q
    |||| ||||||||||||||||||||||||||   || |||| |||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||    
T  45858761 atcagcaaataaatcaacagacatcaaaata---gtcttctgaaatcaacctgattatcttgaggtatattggccttcaatttggctatagcaatagcac 45858857  T
Q  109 gagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtctacctagtg 208  Q
    | |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||    
T  45858858 gtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaaaccctctcctgtgcagcctcttccatcttgtctacctagtg 45858957  T
Q  209 acaagacagtagctgtaagtaactattggatggatatacgagaaggaagaacagaaaacatggaaaatagatttttcttaaataaatttaaaacatacag 308  Q
    ||| ||||||||| ||||||||||||    ||||||||| || |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  45858958 acaggacagtagcggtaagtaactat----tggatatacaaggaggaagaacataaagcatggaaaatagatttttcttaaataaatttaaaacatacag 45859053  T
Q  309 tcattgatctagacagagcagctttgtctcgaaattgtttataaacattttctgttctcttggcaaatagcactgcttcatgtggcctg 397  Q
    |||| | ||  || || ||||||||||||||||||||||||||| |||| | |||||||||||||||||||  ||||||||||||||||    
T  45859054 tcatagctcgggaaagggcagctttgtctcgaaattgtttataagcattctgtgttctcttggcaaatagctttgcttcatgtggcctg 45859142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 51 - 399
Target Start/End: Original strand, 45876731 - 45877069
Alignment:
Q  51 aaatcaacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactg 150  Q
    ||||||||||| ||||||||||||||||  || |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||    
T  45876731 aaatcaacctgtctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctg 45876830  T
Q  151 catccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtctacctagtgacaagacagtagctgtaagtaactattggatggatatacgag 250  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||  || |||||||    ||||||||    |||| |||  ||    
T  45876831 catccttaccggtccaaaccctcccttgtgcaacctcttccatcttgtctacctagcgacgggatagtagct----gtaactat----tggacatagaag 45876922  T
Q  251 aaggaagaacagaaaacatggaaaatagatttttcttaaataaatttaaaacatacagtcattgatctagacagagcagctttgtctcgaaattgtttat 350  Q
      ||||||||||||||||  |||||||| ||||||||  || |||||||||||||||||||||||||| || | ||| || || || |||||||||||||    
T  45876923 ggggaagaacagaaaaca--gaaaatagctttttcttgtatgaatttaaaacatacagtcattgatctggaaaaagccgccttatcacgaaattgtttat 45877020  T
Q  351 aaacattttctgttctcttggcaaatagcactgcttcatgtggcctgca 399  Q
    ||| ||| | ||    ||||||||||||| |||||||||||||||||||    
T  45877021 aaaaattctgtgcagacttggcaaatagctctgcttcatgtggcctgca 45877069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 56208539 - 56208670
Alignment:
Q  64 tgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggt 163  Q
    |||||||||||||| | ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  56208539 tgtcttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggt 56208638  T
Q  164 ccaaaccctcccctgtgcaaccttttccatct 195  Q
    | ||||||||||||||||||||| ||||||||    
T  56208639 ctaaaccctcccctgtgcaacctcttccatct 56208670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 57 - 201
Target Start/End: Complemental strand, 47293600 - 47293456
Alignment:
Q  57 acctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatcct 156  Q
    ||||| |||| ||||||||||| |||||||| ||| |||||||||||||| || ||||  ||||||||||||||||||||||||||||||||||| ||||    
T  47293600 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtcct 47293501  T
Q  157 taccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 201  Q
    ||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  47293500 tactggtccaaatccttccctgtgcaacctcttccatcttgtcta 47293456  T

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Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 55706019 - 55705881
Alignment:
Q  63 ctgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccgg 162  Q
    |||| |||||||||||  || |||| ||| |  |||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| || |||||||    
T  55706019 ctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtctttaccgg 55705920  T
Q  163 tccaaaccctcccctgtgcaaccttttccatcttgtcta 201  Q
    ||||||||||||| || ||||||| ||||||||||||||    
T  55705919 tccaaaccctcccatgcgcaacctcttccatcttgtcta 55705881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 54304357 - 54304249
Alignment:
Q  68 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 167  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||| | ||| ||||||||||||||||||||  |||||  ||| |||||||| ||||||    
T  54304357 ttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaa 54304258  T
Q  168 accctcccc 176  Q
    ||| |||||    
T  54304257 accttcccc 54304249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 307 - 389
Target Start/End: Original strand, 56208678 - 56208760
Alignment:
Q  307 agtcattgatctagacagagcagctttgtctcgaaattgtttataaacattttctgttctcttggcaaatagcactgcttcat 389  Q
    |||||||||||| || ||||| || || ||||||||||||||||||| || || || |||||| ||||||||| |||||||||    
T  56208678 agtcattgatctggaaagagccgcattatctcgaaattgtttataaatatgttgtgctctcttagcaaatagctctgcttcat 56208760  T

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Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 35854687 - 35854542
Alignment:
Q  56 aacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatcc 155  Q
    |||||| |||| ||||||||||| |||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||    
T  35854687 aacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtcc 35854588  T
Q  156 ttaccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 201  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||    
T  35854587 ttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35854542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 35802504 - 35802580
Alignment:
Q  125 agcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 201  Q
    |||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35802580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 10521434 - 10521303
Alignment:
Q  68 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 167  Q
    ||||||||||| |||||| | ||| || |||||||||||||| |||| |||||||||||||||||||||||| |||||| |||| ||||| ||| |||||    
T  10521434 ttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtccttcccgatccaa 10521335  T
Q  168 accctcccctgtgcaaccttttccatcttgtc 199  Q
    | |||||  |||| || || || |||||||||    
T  10521334 atcctcctatgtggaatctctttcatcttgtc 10521303  T

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Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 24357591 - 24357450
Alignment:
Q  65 gtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtc 164  Q
    |||||||||||||| |||||||| ||| ||||| |||||||| || || |  |||||||||||||||||||||||||| ||| ||||||| ||||| |||    
T  24357591 gtcttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtc 24357492  T
Q  165 caaaccctcccctgtgcaaccttttccatcttgtctacctag 206  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||    
T  24357491 caaactctcccctgtgctaccttctccatcttgtccacctag 24357450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 396
Target Start/End: Complemental strand, 24357376 - 24357269
Alignment:
Q  289 aataaatttaaaacatacagtcattgatctagacagagcagctttgtctcgaaattgtttataaacattttctgttctcttggcaaatagcactgcttca 388  Q
    |||||||||| ||||||||||||| ||||| || | ||| || ||||||||||||||||||||  |||| | ||     |||||||||||| ||||||||    
T  24357376 aataaatttagaacatacagtcatagatctggataaagctgccttgtctcgaaattgtttatatgcattctgtgcagatttggcaaatagctctgcttca 24357277  T
Q  389 tgtggcct 396  Q
    | ||||||    
T  24357276 tctggcct 24357269  T

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Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 7972083 - 7972222
Alignment:
Q  63 ctgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccgg 162  Q
    |||| |||||| | || |||||||| ||| ||||||||||||||||| ||||  ||||  |||||||| |||||||||| |||||||||||| |||||||    
T  7972083 ctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaaccattagatactgcatctttaccgg 7972182  T
Q  163 tccaaaccctcccctgtgcaaccttttccatcttgtctac 202  Q
    |||||| ||||| ||||||||||| |||||||||||||||    
T  7972183 tccaaatcctcctctgtgcaacctcttccatcttgtctac 7972222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 7961718 - 7961851
Alignment:
Q  68 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 167  Q
    |||||| |||| |||||||| ||| ||||||||||||||  | ||||  |||||||||||||| |||||| ||| ||||| |||||| ||||| ||||||    
T  7961718 ttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaatcattagatattgcatctttaccagtccaa 7961817  T
Q  168 accctcccctgtgcaaccttttccatcttgtcta 201  Q
    |  ||||| |||||||||| ||||||||||||||    
T  7961818 attctcccttgtgcaacctcttccatcttgtcta 7961851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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