View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_63 (Length: 243)
Name: NF2766_low_63
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 4235662 - 4235501
Alignment:
| Q |
14 |
tcatcagtgtgaacctttcttcttttccttgttcctgttgtgtatgcttttgaaggcctatgaaaaaagtggcgaatttgaccatctttgctaactcctg |
113 |
Q |
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| T |
4235662 |
tcatcagtgtgaacctttcttcttttccttgttcctgttgtgtatgcttttgaaggcctatgaaaaaagtggcgaatttgaccatctttgctaactcctg |
4235563 |
T |
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| Q |
114 |
caatattttacataataatttatatcaatttcttgcatcctcatctcttttgaaataagtgt |
175 |
Q |
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| T |
4235562 |
caatattttacgtaacaatttatatcaatttcttgcatcctcatctcttttgaaataagtgt |
4235501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 4242668 - 4242555
Alignment:
| Q |
20 |
gtgtgaacctttcttcttttccttgttcctgttgtgtatgcttttgaaggcctatgaaaaaagtggcgaatttgaccatctttgctaactcctgcaatat |
119 |
Q |
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| T |
4242668 |
gtgtgaacctttcttcttgtccttgttccagatgtgtatactttagaaggcctatga-aaaagtggcggacctgagcaactttgctaactcctgcattat |
4242570 |
T |
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| Q |
120 |
tttacataataattt |
134 |
Q |
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| T |
4242569 |
tttacagaacaattt |
4242555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 38886950 - 38886850
Alignment:
| Q |
15 |
catcagtgtgaacctttcttcttttccttgttcctgttgtgtatgcttttgaaggcctatgaaaaaagtggcgaatttgaccatctttgctaactcctgc |
114 |
Q |
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| T |
38886950 |
catctgtgtgcacttttcttctttttcttgttcctgttgtgtatgcttttgatggcctgtgaaagaaatgtcggatcagtccatctttgccgactcctgc |
38886851 |
T |
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| Q |
115 |
a |
115 |
Q |
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| T |
38886850 |
a |
38886850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 4235190 - 4235128
Alignment:
| Q |
175 |
tcttaattcttttacaaagtgttgaagataca-------aggttaatttcaccttttcatctc |
230 |
Q |
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| T |
4235190 |
tcttaattcttttacaaagtgttgaagatacaaacttagaggttaatttcaccttttcatctc |
4235128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 28948930 - 28949018
Alignment:
| Q |
14 |
tcatcagtgtgaacctttcttcttttccttgttcctgttgtgtatgcttttgaaggcctatgaaaaaagtggcgaatttgaccatcttt |
102 |
Q |
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| T |
28948930 |
tcatcagtttgaacctttcttcttttccttgttcctgttgtgtatgctttagatggcctgtgaaaaaagtgccggatctgtccatcttt |
28949018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 34830075 - 34830163
Alignment:
| Q |
14 |
tcatcagtgtgaacctttcttcttttccttgttcctgttgtgtatgcttttgaaggcctatgaaaaaagtggcgaatttgaccatcttt |
102 |
Q |
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| T |
34830075 |
tcatcagtttgaacctttcttcttttccttgttcctgttgtgtatgctttagatggcctgtgaaagaagtgccggatctgtccatcttt |
34830163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 30505778 - 30505691
Alignment:
| Q |
26 |
acctttcttcttttccttgttcctgttgtgtatgcttttgaaggcctatgaaaaaagtggcgaatttgaccatctttgctaactcctg |
113 |
Q |
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| T |
30505778 |
acctttcttctttttctagttcctgttgtgtatgccttggatggccggtgaaagaaatggcggatcagtccatctttgcttactcctg |
30505691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 30513179 - 30513140
Alignment:
| Q |
26 |
acctttcttcttttccttgttcctgttgtgtatgcttttg |
65 |
Q |
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| T |
30513179 |
acctttcttctttttcttgttcctgttgtgtatgcctttg |
30513140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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