View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2766_low_64 (Length: 239)
Name: NF2766_low_64
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_64 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 50390270 - 50390032
Alignment:
| Q |
1 |
acaggttttatataccgaatggttctaagaaaagcgaatgaaatagcggcaggaagccaacctataagcaaaatcaaagcctttgagtcattataataaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50390270 |
acaggttttatataccgaatggttctaagaaaagcgaatgaaatagcggcaggaagccaacctataagcaaaatcaaagcctttgagtcattataataaa |
50390171 |
T |
|
| Q |
101 |
tagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattcccaaaacagctccgcgagattcggggaaattcttaacaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50390170 |
tagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattcccaaaacagctccgcgagattcggggaaattcttaacaca |
50390071 |
T |
|
| Q |
201 |
agtaacaagtgaaccggtgtttgcaaaagactgagaatt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50390070 |
agtaacaagtgaaccggtgtttgcaaaagactgagaatt |
50390032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 50393544 - 50393306
Alignment:
| Q |
1 |
acaggttttatataccgaatggttctaagaaaagcgaatgaaatagcggcaggaagccaacctataagcaaaatcaaagcctttgagtcattataataaa |
100 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||||| || |||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||| |||| |
|
|
| T |
50393544 |
acaggtttcatataacgaatggttcgaagaaaagcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaa |
50393445 |
T |
|
| Q |
101 |
tagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattcccaaaacagctccgcgagattcggggaaattcttaacaca |
200 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
50393444 |
tagcagagtaaagctgtgtgattattgcaccactaagaccaacataacctttaagaattcccaaaaccgctccgcgagattcagggaaattcttaacaca |
50393345 |
T |
|
| Q |
201 |
agtaacaagtgaaccggtgtttgcaaaagactgagaatt |
239 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50393344 |
agtcacaagtgaaccagtgtttgcaaaagactgagaatt |
50393306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 50385125 - 50384887
Alignment:
| Q |
1 |
acaggttttatataccgaatggttctaagaaaagcgaatgaaatagcggcaggaagccaacctataagcaaaatcaaagcctttgagtcattataataaa |
100 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||||| || |||||||| |||||||||||||| |||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
50385125 |
acaggtttcatatatcgaatggttcgaagaaaagcaaacgaaatagcagcaggaagccaaccaataaacaaaatcaaagcctttgtgtcatcataataaa |
50385026 |
T |
|
| Q |
101 |
tagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattcccaaaacagctccgcgagattcggggaaattcttaacaca |
200 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||| ||| ||||| |||||||||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
50385025 |
tagcagagtaaagctgtgtgatgattgcaccactgagaccaacatagcctttaagaattcccaaaaccgcgccgcgagattcagggaaattcttaacaca |
50384926 |
T |
|
| Q |
201 |
agtaacaagtgaaccggtgtttgcaaaagactgagaatt |
239 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50384925 |
agtcacaagtgaaccagtgtttgcaaaagactgagaatt |
50384887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 52 - 239
Target Start/End: Complemental strand, 50407106 - 50406919
Alignment:
| Q |
52 |
ggaagccaacctataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatcctt |
151 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||| ||||| | ||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
50407106 |
ggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagaccaacataacctt |
50407007 |
T |
|
| Q |
152 |
ttagaattcccaaaacagctccgcgagattcggggaaattcttaacacaagtaacaagtgaaccggtgtttgcaaaagactgagaatt |
239 |
Q |
| |
|
||| ||| ||||| ||| | || |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
50407006 |
ttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagtaacaagtgaaccagtgtttgaaaaagactgagaatt |
50406919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 24223995 - 24223903
Alignment:
| Q |
69 |
caaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattcc |
161 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | ||| |||||||| |
|
|
| T |
24223995 |
caaaatcaaagcctttgtgtcatcataataaatagcagagtaaagttgtgtgatgattgcaccactaagaccaacataacatttaagaattcc |
24223903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University