View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_65 (Length: 238)
Name: NF2766_low_65
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 57 - 222
Target Start/End: Complemental strand, 7416787 - 7416622
Alignment:
| Q |
57 |
tgcattgcattgcatcgcatctttttccttcaatcaaaaatctgcatagtaatagtataattacattattgcgtataaatggtgaattagaagtagcatt |
156 |
Q |
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| T |
7416787 |
tgcattgcattgcattgcatctttttccttcaatcaaaaatctgcatagtaatagtataattacattattgcgtataaatggtgaattagaagtagcatt |
7416688 |
T |
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| Q |
157 |
tacaccaactacttctctgaacaaacaataaaatgaggcaccataatagacaatccatgaacaatg |
222 |
Q |
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| T |
7416687 |
tacaccaactacttctctgaacaaacaataaaatgaggcaccataatagacaatccatgaacaatg |
7416622 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 52765639 - 52765575
Alignment:
| Q |
126 |
tgcgtataaatggtgaattagaagtagcatttacaccaactacttctctgaacaaacaataaaat |
190 |
Q |
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| T |
52765639 |
tgcgcataaatggagaattgcaactagcatttacaccaactacttctctgaaaaaccaataaaat |
52765575 |
T |
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