View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2766_low_7 (Length: 581)

Name: NF2766_low_7
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2766_low_7
NF2766_low_7
[»] chr8 (3 HSPs)
chr8 (1-576)||(30837677-30838252)
chr8 (129-304)||(16054672-16054847)
chr8 (201-291)||(15050799-15050889)
[»] chr6 (5 HSPs)
chr6 (156-291)||(28524011-28524147)
chr6 (338-534)||(28523697-28523893)
chr6 (163-291)||(28237824-28237953)
chr6 (227-291)||(28245174-28245238)
chr6 (447-508)||(28237579-28237640)
[»] scaffold0010 (2 HSPs)
scaffold0010 (129-290)||(235628-235790)
scaffold0010 (436-530)||(171087-171181)
[»] chr2 (6 HSPs)
chr2 (147-291)||(32600789-32600935)
chr2 (434-549)||(36065083-36065198)
chr2 (434-541)||(32601149-32601257)
chr2 (230-289)||(24578763-24578822)
chr2 (230-284)||(19569719-19569773)
chr2 (241-289)||(17628247-17628295)
[»] chr7 (5 HSPs)
chr7 (129-291)||(22384095-22384257)
chr7 (451-549)||(45365119-45365217)
chr7 (187-274)||(45364839-45364926)
chr7 (498-557)||(9698471-9698530)
chr7 (214-290)||(9699175-9699251)
[»] chr1 (7 HSPs)
chr1 (181-291)||(40936522-40936632)
chr1 (405-540)||(21425111-21425248)
chr1 (145-291)||(21424736-21424883)
chr1 (192-291)||(28217006-28217105)
chr1 (434-526)||(24780723-24780813)
chr1 (143-228)||(18235771-18235856)
chr1 (129-173)||(28538541-28538585)
[»] chr5 (8 HSPs)
chr5 (146-291)||(27810052-27810198)
chr5 (143-287)||(4983181-4983326)
chr5 (434-557)||(16993530-16993652)
chr5 (218-291)||(6434907-6434979)
chr5 (438-508)||(6434632-6434702)
chr5 (129-171)||(16988354-16988396)
chr5 (230-290)||(13502347-13502407)
chr5 (239-291)||(16993264-16993316)
[»] scaffold0038 (3 HSPs)
scaffold0038 (163-291)||(37986-38115)
scaffold0038 (227-291)||(45336-45400)
scaffold0038 (447-508)||(37741-37802)
[»] chr4 (4 HSPs)
chr4 (146-291)||(9003241-9003387)
chr4 (146-250)||(27655805-27655910)
chr4 (498-557)||(13564848-13564907)
chr4 (214-290)||(13565552-13565628)
[»] chr3 (5 HSPs)
chr3 (436-557)||(45884587-45884709)
chr3 (129-229)||(25226639-25226740)
chr3 (220-291)||(25227439-25227512)
chr3 (446-538)||(27047952-27048045)
chr3 (197-288)||(25231895-25231989)


Alignment Details
Target: chr8 (Bit Score: 532; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Original strand, 30837677 - 30838252
Alignment:
Q  1 tggcacggggagtagctaggcttaccatctacgaatggaagaaccaaaaaggcgaatttcaatcttactaaggatcatatctgaaaaagcgaattttact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30837677 tggcacggggagtagctaggcttaccatctacgaatggaagaactaaaaaggcgaatttcaattttactaaggatcatatctgaaaaagcgaattttact 30837776  T
Q  101 aaggcaggagatttacatattttaatttttgtgctaaaagatcacgagtatgaatctttgaaatgtgaaccaagtggttttaaactagatccatgctcca 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30837777 aaggcagtagatttacatattttaatttttgtgctaaaagatcacgagtatgaatctttgaaatgtgaaccaagtggttttaaactagatccatgctcca 30837876  T
Q  201 aagtctacacttgacacttgagaatttagtaactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtttatattcttcatcctc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30837877 aagtctacacttgacacttgagaatttagtaactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtttatattcttcatcctc 30837976  T
Q  301 ctccaataaatcttttgaaatttctactattatcatatggaacctactcttaagaaactattatatcattacgacactgacacttatgcttttggctgct 400  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||     
T  30837977 ctccaagaaatcttttgaaatttctactattatcatatggaacctactcttaagaaactattatatcattaggtcactgacacttatgcttttggctgcc 30838076  T
Q  401 ctcaaaagtcaatgactcatgttcttgtgttataaaattgagatggagagattagagatcgagaattagaaagaaaggatagacataaattcgggtaaaa 500  Q
     |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30838077 gtcaaaagtcaatgactcatgttcttgtgttataaaattgaaatggagagattagagatcgagaattagaaagaaatgatagacataaattcgggtaaaa 30838176  T
Q  501 taatatgacttttgactgttaatatataagagttaaaaatccgactcttcaattattattcatgcttcatctcact 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30838177 taatatgacttttgactgttaatatataagagttaaaaatccgactcttcaattattattcatgcttcatatcact 30838252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 129 - 304
Target Start/End: Complemental strand, 16054847 - 16054672
Alignment:
Q  129 ttgtgctaaaagatcacgagtatgaatctttgaaatgtgaaccaagtggttttaaactagatccatgctccaaagtctacacttgacacttgagaattta 228  Q
    |||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||| ||| ||||||||    
T  16054847 ttgtgcaaaaagaacacgagtatggatctttgaaatgtgaaccaagtggttataaactagatccatgccctaaagtctacactcgacgcttaagaattta 16054748  T
Q  229 gtaactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtttatattcttcatcctcctcc 304  Q
    |||||||| |||||||| |||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||    
T  16054747 gtaactaaagagaacatattttacacaatagcacatatggatcataattcaatatttatattcttccttctcctcc 16054672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 291
Target Start/End: Complemental strand, 15050889 - 15050799
Alignment:
Q  201 aagtctacacttgacacttgagaatttagtaactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtttatattc 291  Q
    ||||||| | |||||||||||||||| ||| ||||| |||| ||| ||||  | ||||||  | ||| |||||||||||||||||||||||    
T  15050889 aagtctatatttgacacttgagaattcagttactaaagagatcatattttatataatagcctacatgaatcataattcaatgtttatattc 15050799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 156 - 291
Target Start/End: Complemental strand, 28524147 - 28524011
Alignment:
Q  156 ctttgaaatgtgaaccaagtggttttaaactag-atccatgctccaaagtctacacttgacacttgagaatttagtaactaaggagaacatgttttccac 254  Q
    |||||||||||||| ||||||| | |||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||| |||| |||||||| |||    
T  28524147 ctttgaaatgtgaatcaagtggctctaaactaggatccatgctccaaagtctacattcgacacttgagaatttagtaattaaagagagcatgttttacac 28524048  T
Q  255 aatagcacatatggatcataattcaatgtttatattc 291  Q
    ||||||||| || ||||||||||||||||||||||||    
T  28524047 aatagcacacatagatcataattcaatgtttatattc 28524011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 338 - 534
Target Start/End: Complemental strand, 28523893 - 28523697
Alignment:
Q  338 tggaacctactcttaagaaactattatatcattacgacactgacacttatgcttttggctgctctcaaaagtcaatgactcatgttcttgtgttataa-a 436  Q
    ||||||||||| ||| || |||||||||||  ||| ||| ||||| ||||||||||||    | || |||||||||||||  ||||||| |||||  | |    
T  28523893 tggaacctacttttaggagactattatatctatactacattgacatttatgcttttggagtttgtcgaaagtcaatgacttgtgttcttttgttaacaca 28523794  T
Q  437 attgagatggagagattagagatcgagaattagaaagaaaggatagacataaattcgggtaaaataatatgacttttgactgttaatatataagagtt 534  Q
    |||||| |  ||||||| ||||| ||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||| ||||||||||||||||    
T  28523793 attgagttt-agagattggagattgagaattagaaagaaaggatacacataaactcaggtaaaataatatgatttttgactcttaatatataagagtt 28523697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 163 - 291
Target Start/End: Complemental strand, 28237953 - 28237824
Alignment:
Q  163 atgtgaaccaagtggttttaaactag-atccatgctccaaagtctacacttgacacttgagaatttagtaactaaggagaacatgttttccacaatagca 261  Q
    ||||||||||||||| | |||  ||| ||||||||||||||||||||| | ||||||| | |||||||||||||| |||| |||||||| |||||||||     
T  28237953 atgtgaaccaagtggctctaaggtaggatccatgctccaaagtctacattcgacacttaataatttagtaactaaagagagcatgttttacacaatagcg 28237854  T
Q  262 catatggatcataattcaatgtttatattc 291  Q
    || |||||| |||||| |||||||||||||    
T  28237853 cacatggattataatttaatgtttatattc 28237824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 28245238 - 28245174
Alignment:
Q  227 tagtaactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtttatattc 291  Q
    |||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||||    
T  28245238 tagtaactaaagagaatatgttttacacaatagcacacatggatcataattcaatgtttatattc 28245174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 447 - 508
Target Start/End: Complemental strand, 28237640 - 28237579
Alignment:
Q  447 agagattagagatcgagaattagaaagaaaggatagacataaattcgggtaaaataatatga 508  Q
    |||||||| |||| ||||||||||||||||||| | ||||||||||| ||||||||||||||    
T  28237640 agagattaaagattgagaattagaaagaaaggaaacacataaattcgagtaaaataatatga 28237579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 129 - 290
Target Start/End: Complemental strand, 235790 - 235628
Alignment:
Q  129 ttgtgctaaaagatcacgagtatgaatctttgaaatgtgaaccaagtggttttaaactag-atccatgctccaaagtctacacttgacacttgagaattt 227  Q
    |||||| |||||| || |||||||||||||||||||||||| ||||||  |||||||||| |||||||||||| ||||||| || |||||||||||||||    
T  235790 ttgtgcaaaaagaacatgagtatgaatctttgaaatgtgaatcaagtgactttaaactaggatccatgctccatagtctacgctcgacacttgagaattt 235691  T
Q  228 agtaactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtttatatt 290  Q
    ||||| ||| |||||||||||||  |||| | |||| ||| ||||||||| | ||||||||||    
T  235690 agtaattaaagagaacatgttttatacaacaacacacatgaatcataattaagtgtttatatt 235628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 436 - 530
Target Start/End: Complemental strand, 171181 - 171087
Alignment:
Q  436 aattgagatggagagattagagatcgagaattagaaagaaaggatagacataaattcgggtaaaataatatgacttttgactgttaatatataag 530  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||| ||||||| |||| |||||| |||||| |||| | ||||||||||||||    
T  171181 aattgagatggagagattagagattgagaactagaaagaaagtatacacataaactcggataaaatcatatgaattttcagtgttaatatataag 171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 147 - 291
Target Start/End: Original strand, 32600789 - 32600935
Alignment:
Q  147 agtatgaatctttgaaatgtgaaccaagtggttt-taaacta-gatccatgctccaaagtctacacttgacacttgagaatttagtaactaaggagaaca 244  Q
    |||||| |||||||||||||||||||| ||  |  ||||||| ||||||||||||||| |||||||| ||||  |||||||||| ||||||| |||||||    
T  32600789 agtatgtatctttgaaatgtgaaccaactgactcctaaactaagatccatgctccaaaatctacactcgacatatgagaatttattaactaaagagaaca 32600888  T
Q  245 tgttttccacaatagcacatatggatcataattcaatgtttatattc 291  Q
    |||||| ||||||| |||| |||||||||||||||||||||||||||    
T  32600889 tgttttacacaataacacacatggatcataattcaatgtttatattc 32600935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 434 - 549
Target Start/End: Original strand, 36065083 - 36065198
Alignment:
Q  434 aaaattgagatggagagattagagatcgagaattagaaagaaaggatagacataaattcgggtaaaataatatgacttttgactgttaatatataagagt 533  Q
    ||||||||||| |||||||||||||| ||||| || ||||| |||||| || |||| ||   |||||||||||||||||  | ||||||||||||||||     
T  36065083 aaaattgagatagagagattagagattgagaactaaaaagataggatacacttaaactcacataaaataatatgactttctagtgttaatatataagagc 36065182  T
Q  534 taaaaatccgactctt 549  Q
    |||||||| |||||||    
T  36065183 taaaaatctgactctt 36065198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 434 - 541
Target Start/End: Original strand, 32601149 - 32601257
Alignment:
Q  434 aaaattgagatggagagattagagatcgagaattagaaagaaaggatagacataaattc-gggtaaaataatatgacttttgactgttaatatataagag 532  Q
    ||||||| ||||||||||||| |||| |||||||  |||||||||||| ||||||| ||   |||||| ||||| |||||||| |||| |||||||||||    
T  32601149 aaaattgggatggagagattaaagattgagaattgaaaagaaaggatacacataaactcactgtaaaacaatataacttttgagtgttgatatataagag 32601248  T
Q  533 ttaaaaatc 541  Q
     ||||||||    
T  32601249 ctaaaaatc 32601257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 24578763 - 24578822
Alignment:
Q  230 taactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtttatat 289  Q
    ||||||| || |||||||||  || || |||||| |||||||||||||||||||||||||    
T  24578763 taactaaagacaacatgtttatcaaaacagcacacatggatcataattcaatgtttatat 24578822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 19569719 - 19569773
Alignment:
Q  230 taactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtt 284  Q
    ||||||| || |||||||||  || ||||||||| ||||||||||||||||||||    
T  19569719 taactaaagacaacatgtttatcaaaatagcacacatggatcataattcaatgtt 19569773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 17628295 - 17628247
Alignment:
Q  241 aacatgttttccacaatagcacatatggatcataattcaatgtttatat 289  Q
    |||||||||  || || |||||| |||||||||||||||||||||||||    
T  17628295 aacatgtttatcaaaacagcacacatggatcataattcaatgtttatat 17628247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 129 - 291
Target Start/End: Complemental strand, 22384257 - 22384095
Alignment:
Q  129 ttgtgctaaaagatcacgagtatgaatctttgaaatgtgaaccaagtggttttaaactag-atccatgctccaaagtctacacttgacacttgagaattt 227  Q
    |||||| |||||| || |||||||| ||||| ||||||||| ||||||||| |||  ||| ||||||||||||||||  |||||  | ||||||||||||    
T  22384257 ttgtgcaaaaagaacatgagtatgagtctttaaaatgtgaatcaagtggttctaatataggatccatgctccaaagttaacactcaa-acttgagaattt 22384159  T
Q  228 agtaactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtttatattc 291  Q
    ||||||||| |||| |||  ||| ||||||| |||||||||||||||||||||| |||||||||    
T  22384158 agtaactaaagagagcatagtttacacaataacacatatggatcataattcaatctttatattc 22384095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 451 - 549
Target Start/End: Original strand, 45365119 - 45365217
Alignment:
Q  451 attagagatcgagaattagaaagaaaggatagacataaattcgggtaaaataatatgacttttgactgttaatatataagagttaaaaatccgactctt 549  Q
    ||||||||| || |||||||||||||| ||| ||||||| |||  ||||||||||| |||||||| ||||||||||||||||||||||||  |||||||    
T  45365119 attagagattgaaaattagaaagaaagaatatacataaactcgaataaaataatatcacttttgagtgttaatatataagagttaaaaatatgactctt 45365217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 45364839 - 45364926
Alignment:
Q  187 agatccatgctccaaagtctacacttgacacttgagaatttagtaactaaggagaacatgttttccacaatagcacatatggatcata 274  Q
    |||| ||||||||||||| |||||| |||| ||||||||||||| | ||| || |||||||||| |||||||||||| ||||||||||    
T  45364839 agattcatgctccaaagtttacactcgacatttgagaatttagttaataaagataacatgttttacacaatagcacacatggatcata 45364926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 498 - 557
Target Start/End: Complemental strand, 9698530 - 9698471
Alignment:
Q  498 aaataatatgacttttgactgttaatatataagagttaaaaatccgactcttcaattatt 557  Q
    |||||||||||||||||| ||||||||||||||||||| ||||  ||||||| |||||||    
T  9698530 aaataatatgacttttgagtgttaatatataagagttataaatatgactcttgaattatt 9698471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 9699251 - 9699175
Alignment:
Q  214 acacttgagaatttagtaactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtttatatt 290  Q
    |||||| ||| |||||||||||| |||| ||| |||| || || | |||| ||| |||||||||||||| |||||||    
T  9699251 acacttaagagtttagtaactaaagagagcatattttacagaacaacacacatgaatcataattcaatggttatatt 9699175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 181 - 291
Target Start/End: Original strand, 40936522 - 40936632
Alignment:
Q  181 taaactagatccatgctccaaagtctacacttgacacttgagaatttagtaactaaggagaacatgttttccacaatagcacatatggatcataattcaa 280  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||||  ||||||| |||| || ||||| |||||||||||| ||||||||||||||||    
T  40936522 taaactagattcatgctccaaaatctacactcgacacttgagaattttataactaaagagagcaagttttacacaatagcacacatggatcataattcaa 40936621  T
Q  281 tgtttatattc 291  Q
    || ||||||||    
T  40936622 tggttatattc 40936632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 405 - 540
Target Start/End: Original strand, 21425111 - 21425248
Alignment:
Q  405 aaagtcaatgactcatgttcttgtgttat-aaaattgagatggagagattagagatcgagaa-ttagaaagaaaggatagacataaattcgggtaaaata 502  Q
    |||||||||||||  |||||||||||||  |||||||||||||||||||||||||| || || |||||||||||||||  ||||||| |||| ||||| |    
T  21425111 aaagtcaatgacttgtgttcttgtgttaacaaaattgagatggagagattagagattgaaaaattagaaagaaaggatccacataaactcggataaaaca 21425210  T
Q  503 atatgacttttgactgttaatatataagagttaaaaat 540  Q
    ||||||||||||| | |||||||||| ||| |||||||    
T  21425211 atatgacttttgagttttaatatatatgagctaaaaat 21425248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 145 - 291
Target Start/End: Original strand, 21424736 - 21424883
Alignment:
Q  145 cgagtatgaatctttgaaatgtgaaccaagtggttttaaactag-atccatgctccaaagtctacacttgacacttgagaatttagtaactaaggagaac 243  Q
    |||||||| || ||||||||||||||||| |   | |||||||| ||| ||||||||||||||||| | ||||||||  ||| ||||||| || |||| |    
T  21424736 cgagtatgtatatttgaaatgtgaaccaaatcactctaaactaggatctatgctccaaagtctacattcgacacttggaaatctagtaaccaaagagagc 21424835  T
Q  244 atgttttccacaatagcacatatggatcataattcaatgtttatattc 291  Q
    ||||| | |||||||||||| |||||||||||||||||||||||||||    
T  21424836 atgttctacacaatagcacacatggatcataattcaatgtttatattc 21424883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 192 - 291
Target Start/End: Original strand, 28217006 - 28217105
Alignment:
Q  192 catgctccaaagtctacacttgacacttgagaatttagtaactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtttatattc 291  Q
    |||||||||||||||||| | ||||||||||||||||||||  || |||| |||||||| |||||||||||| ||||| | | |||||||||||||||||    
T  28217006 catgctccaaagtctacattcgacacttgagaatttagtaatcaaagagagcatgttttacacaatagcacacatggaacgttattcaatgtttatattc 28217105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 434 - 526
Target Start/End: Complemental strand, 24780813 - 24780723
Alignment:
Q  434 aaaattgagatggagagattagagatcgagaattagaaagaaaggatagacataaattcgggtaaaataatatgacttttgactgttaatata 526  Q
    ||||||||||||||||   ||||||| |||||||  ||||||| |||| ||||||| || |||||||||||||| ||||||| ||||||||||    
T  24780813 aaaattgagatggagac--tagagattgagaattgaaaagaaatgatacacataaactcaggtaaaataatatggcttttgaatgttaatata 24780723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 18235856 - 18235771
Alignment:
Q  143 cacgagtatgaatctttgaaatgtgaaccaagtggttttaaactag-atccatgctccaaagtctacacttgacacttgagaattta 228  Q
    |||||||||| ||||||||||||||||||||  || | |||||||| || |||| |||||||||||||| | |||||||||||||||    
T  18235856 cacgagtatggatctttgaaatgtgaaccaatcggctctaaactagtattcatgatccaaagtctacac-tcacacttgagaattta 18235771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 28538541 - 28538585
Alignment:
Q  129 ttgtgctaaaagatcacgagtatgaatctttgaaatgtgaaccaa 173  Q
    |||||||| |||| ||| |||||||||||||||||||||||||||    
T  28538541 ttgtgctagaagaacacaagtatgaatctttgaaatgtgaaccaa 28538585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 146 - 291
Target Start/End: Original strand, 27810052 - 27810198
Alignment:
Q  146 gagtatgaatctttgaaatgtgaaccaagtggttttaaactag-atccatgctccaaagtctacacttgacacttgagaatttagtaactaaggagaaca 244  Q
    |||||||||||||||||||||||||||| ||  | |||| ||  || |||||||||||||||||||| |||||||||||||||||||   ||  ||||||    
T  27810052 gagtatgaatctttgaaatgtgaaccaaatgaatctaaattactatacatgctccaaagtctacactcgacacttgagaatttagtagtcaaaaagaaca 27810151  T
Q  245 tgttttccacaatagcacatatggatcataattcaatgtttatattc 291  Q
    |||||| ||||||| |||| || ||| |||||| |||||||||||||    
T  27810152 tgttttacacaataacacaaatagattataatttaatgtttatattc 27810198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 143 - 287
Target Start/End: Original strand, 4983181 - 4983326
Alignment:
Q  143 cacgagtatgaatctttgaaatgtgaaccaagtggttttaaactag-atccatgctccaaagtctacacttgacacttgagaatttagtaactaaggaga 241  Q
    |||||||||| |||||||||||||||||||| |   | |||| ||| || || ||||||||||||||||| ||||||| |||||||| ||| ||| ||||    
T  4983181 cacgagtatggatctttgaaatgtgaaccaattaactctaaattaggattcaagctccaaagtctacactcgacacttaagaatttattaattaaagaga 4983280  T
Q  242 acatgttttccacaatagcacatatggatcataattcaatgtttat 287  Q
     |||||||| |||| ||||||||||| ||||||| |||||||||||    
T  4983281 gcatgttttacacattagcacatatgaatcataactcaatgtttat 4983326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 434 - 557
Target Start/End: Original strand, 16993530 - 16993652
Alignment:
Q  434 aaaattgagatggagagattagagatcgagaattagaaagaaaggatagacataaattcgggtaaaataatatgacttttgactgttaatatat-aagag 532  Q
    ||||||||||  |||| |||| |||| |||||||||||||||| |||| ||||||| ||| ||||||||  ||||||||||| ||||||||||| |||||    
T  16993530 aaaattgagacagagacattaaagattgagaattagaaagaaatgatacacataaactcgagtaaaata--atgacttttgagtgttaatatataaagag 16993627  T
Q  533 ttaaaaatccgactcttcaattatt 557  Q
    || |||| | ||||| | |||||||    
T  16993628 tttaaaaccagactcataaattatt 16993652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 6434979 - 6434907
Alignment:
Q  218 ttgagaatttagtaactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtttatattc 291  Q
    ||||||||||| ||||||| |||| |||| ||| |||||||||||| ||||||||||||| |||||||||||||    
T  6434979 ttgagaatttaataactaaagagagcatgatttacacaatagcacacatggatcataatt-aatgtttatattc 6434907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 508
Target Start/End: Complemental strand, 6434702 - 6434632
Alignment:
Q  438 ttgagatggagagattagagatcgagaattagaaagaaaggatagacataaattcgggtaaaataatatga 508  Q
    |||||||||  | ||||||||| |||||||   |||||| |||| ||||||| ||||||||||||||||||    
T  6434702 ttgagatgggaaaattagagattgagaattgataagaaatgatacacataaactcgggtaaaataatatga 6434632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 16988354 - 16988396
Alignment:
Q  129 ttgtgctaaaagatcacgagtatgaatctttgaaatgtgaacc 171  Q
    |||||| |||||| |||||||||| ||||||||||||||||||    
T  16988354 ttgtgcaaaaagaacacgagtatggatctttgaaatgtgaacc 16988396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 13502407 - 13502347
Alignment:
Q  230 taactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtttatatt 290  Q
    ||||||| || |||||||||  || || | |||| ||||||||||||||||||||||||||    
T  13502407 taactaaagacaacatgtttatcaaaacaacacacatggatcataattcaatgtttatatt 13502347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 16993264 - 16993316
Alignment:
Q  239 agaacatgttttccacaatagcacatatggatcataattcaatgtttatattc 291  Q
    |||| ||||||| |||||||||||| ||| ||||||||| |||| ||||||||    
T  16993264 agaatatgttttacacaatagcacacatgaatcataatttaatgcttatattc 16993316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 163 - 291
Target Start/End: Complemental strand, 38115 - 37986
Alignment:
Q  163 atgtgaaccaagtggttttaaactag-atccatgctccaaagtctacacttgacacttgagaatttagtaactaaggagaacatgttttccacaatagca 261  Q
    ||||||||||||||| | |||  ||| ||||||||||||||||||||| | ||||||| | |||||||||||||| |||| |||||||| |||||||||     
T  38115 atgtgaaccaagtggctctaaggtaggatccatgctccaaagtctacattcgacacttaataatttagtaactaaagagagcatgttttacacaatagcg 38016  T
Q  262 catatggatcataattcaatgtttatattc 291  Q
    || |||||| |||||| |||||||||||||    
T  38015 cacatggattataatttaatgtttatattc 37986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 45400 - 45336
Alignment:
Q  227 tagtaactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtttatattc 291  Q
    |||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||||    
T  45400 tagtaactaaagagaatatgttttacacaatagcacacatggatcataattcaatgtttatattc 45336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 447 - 508
Target Start/End: Complemental strand, 37802 - 37741
Alignment:
Q  447 agagattagagatcgagaattagaaagaaaggatagacataaattcgggtaaaataatatga 508  Q
    |||||||| |||| ||||||||||||||||||| | ||||||||||| ||||||||||||||    
T  37802 agagattaaagattgagaattagaaagaaaggaaacacataaattcgagtaaaataatatga 37741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 146 - 291
Target Start/End: Original strand, 9003241 - 9003387
Alignment:
Q  146 gagtatgaatctttgaaatgtgaaccaagtggttttaaactaga-tccatgctccaaagtctacacttgacacttgagaatttagtaactaaggagaaca 244  Q
    |||||| ||||||||||||||||| ||||||||| |||  |||| || ||||||||||||| ||||| ||||||||| |||||||||||||| |||||||    
T  9003241 gagtataaatctttgaaatgtgaatcaagtggttctaatttagaatctatgctccaaagtcaacactcgacacttgaaaatttagtaactaaagagaaca 9003340  T
Q  245 tgttttccacaatagcacatatggatcataattcaatgtttatattc 291  Q
    ||||||  |||||  ||||  |  |||||||| |||| |||||||||    
T  9003341 tgttttatacaattacacacctaaatcataatccaatctttatattc 9003387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 27655910 - 27655805
Alignment:
Q  146 gagtatgaatctttgaaatgtgaaccaagtggttttaaactagat-ccatgctccaaagtctacacttgacacttgagaatttagtaactaaggagaaca 244  Q
    ||||||| |||||||||||||||||||||||| | || ||||| | || |||||||||||||||||| |||||||||||||||||||||||| || ||||    
T  27655910 gagtatggatctttgaaatgtgaaccaagtggctctacactaggttccgtgctccaaagtctacactcgacacttgagaatttagtaactaaagaaaaca 27655811  T
Q  245 tgtttt 250  Q
    | ||||    
T  27655810 tttttt 27655805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 498 - 557
Target Start/End: Complemental strand, 13564907 - 13564848
Alignment:
Q  498 aaataatatgacttttgactgttaatatataagagttaaaaatccgactcttcaattatt 557  Q
    |||||||||||||||||| ||||||||||||||||||| ||||  ||||||| |||||||    
T  13564907 aaataatatgacttttgagtgttaatatataagagttataaatatgactcttgaattatt 13564848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 13565628 - 13565552
Alignment:
Q  214 acacttgagaatttagtaactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtttatatt 290  Q
    |||||| ||| |||||||||||| |||| ||| |||| || || | |||| ||| |||||||||||||| |||||||    
T  13565628 acacttaagagtttagtaactaaagagagcatattttacagaacaacacacatgaatcataattcaatggttatatt 13565552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 436 - 557
Target Start/End: Original strand, 45884587 - 45884709
Alignment:
Q  436 aattgagatggagagattagagatcgagaattagaaa-gaaaggatagacataaattcgggtaaaataatatgacttttgactgttaatatataagagtt 534  Q
    ||||||||| ||||||||| | || |||||||||||| ||||||| | ||||||| |||||||||||||||||| |||||| |||||||||||| |||      
T  45884587 aattgagattgagagattataaattgagaattagaaaagaaaggaaacacataaactcgggtaaaataatatgatttttgagtgttaatatatacgagca 45884686  T
Q  535 aaaaatccgactcttcaattatt 557  Q
    |||| ||  ||||||||||||||    
T  45884687 aaaactcgaactcttcaattatt 45884709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 25226639 - 25226740
Alignment:
Q  129 ttgtgctaaaagatcacgagtatgaatctttgaaatgtgaaccaagtggttttaaacta-gatccatgctccaaagtctacacttgacacttgagaattt 227  Q
    |||||| |||||| ||||||||||||||||||||||||||| ||||||  | ||||  | |||||||||| |||| |||||||| ||||||||| |||||    
T  25226639 ttgtgcaaaaagaacacgagtatgaatctttgaaatgtgaatcaagtgagtctaaatgaggatccatgcttcaaaatctacactcgacacttgaaaattt 25226738  T
Q  228 ag 229  Q
    ||    
T  25226739 ag 25226740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 25227439 - 25227512
Alignment:
Q  220 gagaatttagtaactaaggagaacatgttttccacaatag--cacatatggatcataattcaatgtttatattc 291  Q
    ||||||||| ||||||| ||||||||||||| |||||||   |||||||||||||||||| |||||||||||||    
T  25227439 gagaatttattaactaaagagaacatgttttacacaatatatcacatatggatcataatttaatgtttatattc 25227512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 446 - 538
Target Start/End: Original strand, 27047952 - 27048045
Alignment:
Q  446 gagagattagagatcgagaattagaaagaaa-ggatagacataaattcgggtaaaataatatgacttttgactgttaatatataagagttaaaa 538  Q
    |||||||||| ||| |||||||||||||||| || || |||| || | || |||||||||||||||||| | |||||||||||||||| |||||    
T  27047952 gagagattagtgattgagaattagaaagaaaagggtatacattaacttggataaaataatatgacttttaagtgttaatatataagagctaaaa 27048045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 197 - 288
Target Start/End: Original strand, 25231895 - 25231989
Alignment:
Q  197 tccaaagtctacacttgacacttgagaatttagtaactaaggagaacatgtttt---ccacaatagcacatatggatcataattcaatgtttata 288  Q
    |||||||||||||||  |||||| |||||||| ||||||| |||| ||||||||   | ||||||||||| ||||||| |||||| |||||||||    
T  25231895 tccaaagtctacactcaacacttaagaatttaataactaaagagagcatgttttacacaacaatagcacacatggatcgtaattcgatgtttata 25231989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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