View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_8 (Length: 564)
Name: NF2766_low_8
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Complemental strand, 36290789 - 36290236
Alignment:
| Q |
1 |
tgaatctttagctggtatcagcttgccacgtggacaaggaatctgcacaagagtacccttaattatgcgccttcagaatcatccactttcaaaaccagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290789 |
tgaatctttagctggtatcagcttgccacgtggacaaggaatctgcacgagagtacccttaattatgcgccttcagaatcatccactttcaaaaccagaa |
36290690 |
T |
|
| Q |
101 |
ctcttgtaagaattcaatagcaaaacagttttcactgatgaaaaagatgtttctgatgcaataaacatagctactgaggaaattgctggttctgccaaag |
200 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290689 |
ctcttgttagaattcaatggcaaaacagttttcactgatgaaaaagatgtttctgatgcaataaacatagctactgaggaaattgctggttctgccaaag |
36290590 |
T |
|
| Q |
201 |
ggatttccaacactcctttgacattgattgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290589 |
ggatttccaacactcctttgacattgattgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatgg |
36290490 |
T |
|
| Q |
301 |
tcaacctgataatatctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatcttgaatgtcctttctgctactgttgat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36290489 |
tcaacctgataatatctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatctcgaatgtcctttctgctactgttgat |
36290390 |
T |
|
| Q |
401 |
tttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcctgaaggat |
500 |
Q |
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| T |
36290389 |
tttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcctgaaggat |
36290290 |
T |
|
| Q |
501 |
tgttggagaaggttactgctgatgatgttaacatcggtctaggttatgtctgtg |
554 |
Q |
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| T |
36290289 |
tgttggagaaggttaccgctgatgatgttaacatcggtctaggttatgtctgtg |
36290236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 36313272 - 36312739
Alignment:
| Q |
1 |
tgaatctttagctggtatcagcttgccacgtggacaaggaatctgcacaagagtacccttaattatgcgccttcagaatcatccactttcaaaaccagaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||| || ||||| | || || || ||| ||| || | ||||| |
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| T |
36313272 |
tgaatcattagctggtatcagcttgccacgtggacaaggaatttgtacaagggtacctttggttatgaggctgcaaaaccatttgcttccacagccagag |
36313173 |
T |
|
| Q |
101 |
ctcttgtaagaattcaatagcaaaacagttttcactgatgaaaaagatgtttctgatgcaataaacatagctactgaggaaattgctggttctgccaaag |
200 |
Q |
| |
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|| | | || | ||| ||||| ||||| ||||||||| | |||| |||||||| ||||||| ||||||||| || ||||||| ||||||||| |
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| T |
36313172 |
cttgtattggagtataatggcaaacaggttttaactgatgaagcaaatgtctctgatgctataaacacagctactgaagagcttgctggaactgccaaag |
36313073 |
T |
|
| Q |
201 |
ggatttccaacactcctttgacattgattgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatgg |
300 |
Q |
| |
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||||||| |||||||| |||| |||||||| |||||||| || |||||||| ||||| |||||||||||||||||||| || ||||| ||||||||||| |
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| T |
36313072 |
ggatttcaaacactccactgactttgattgtgaagaagaatggcgttcctgaccttacaatggttgatcttccaggtataactcgtgttcctgttcatgg |
36312973 |
T |
|
| Q |
301 |
tcaacctgataatatctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatcttgaatgtcctttctgctactgttgat |
400 |
Q |
| |
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|||||||||||| || |||||||||||||| |||||||| ||||| ||||||||||||||||| || |||||| ||||||| |||||||||||||||||| |
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| T |
36312972 |
tcaacctgataacatttatgatcagattaaggatattatcatggactatataactcctgaagagagcattatcctgaatgttctttctgctactgttgat |
36312873 |
T |
|
| Q |
401 |
tttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcctgaaggat |
500 |
Q |
| |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| || |||||||| |||||||| | |
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| T |
36312872 |
tttagtacttgtgagtctattaggatgtcacagatggttgataaaactggtttgaggacattagctgttgtaacaaaggctgataaatcacctgaaggtt |
36312773 |
T |
|
| Q |
501 |
tgttggagaaggttactgctgatgatgttaacat |
534 |
Q |
| |
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|||||||||| || |||||||||||||||||||| |
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| T |
36312772 |
tgttggagaaagtaactgctgatgatgttaacat |
36312739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 359 - 529
Target Start/End: Complemental strand, 33579845 - 33579675
Alignment:
| Q |
359 |
gaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgagga |
458 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||||| | ||||||||||| | ||||||||| ||| ||||||||||||||||||||| |
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| T |
33579845 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactggtttgaggt |
33579746 |
T |
|
| Q |
459 |
cacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgtt |
529 |
Q |
| |
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||||||||| | |||| || ||||||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
33579745 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
33579675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 375
Target Start/End: Complemental strand, 33579949 - 33579866
Alignment:
| Q |
292 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatctt |
375 |
Q |
| |
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||||||| ||||| |||||||| |||||||| ||| |||||||||||||||||| |||| || |||||||| |||||||| |
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| T |
33579949 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttatacctatggaagaaagcattatctt |
33579866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 359 - 529
Target Start/End: Original strand, 15997153 - 15997323
Alignment:
| Q |
359 |
gaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgagga |
458 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||||| | ||||||||||| | ||||||||| ||| ||||||||||||| ||||||| |
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| T |
15997153 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactgatttgaggt |
15997252 |
T |
|
| Q |
459 |
cacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgtt |
529 |
Q |
| |
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||||||||| | |||| || ||||||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
15997253 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
15997323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 15997057 - 15997118
Alignment:
| Q |
292 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataa |
353 |
Q |
| |
|
||||||| ||||| |||||||| |||||||| ||| |||||||||||||||||| ||||| |
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|
| T |
15997057 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttataa |
15997118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Original strand, 30575787 - 30575823
Alignment:
| Q |
493 |
tgaaggattgttggagaaggttactgctgatgatgtt |
529 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||| |
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| T |
30575787 |
tgaaggattgtttgagaaagttactgctgatgatgtt |
30575823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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