View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2766_low_9 (Length: 540)
Name: NF2766_low_9
Description: NF2766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2766_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Original strand, 33559448 - 33559974
Alignment:
| Q |
1 |
ttgttgaaataatacaactgattcaacaatttggtcaattcacatttaatttaaccaataaatttcatggtaaatcctaagtctaaatacactatgtatg |
100 |
Q |
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| T |
33559448 |
ttgttgaaataatacaactgattcaacaatttggtcaattcacatttaatttaaccaataaatttcatggtaaatcctaagtctaaatacactatgtatg |
33559547 |
T |
|
| Q |
101 |
aattattttgtgcttacaagttgagaacaattatcacatggatattttgagaaggatagcaatatagcataacaacaataaataaatgaagggtaaccct |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33559548 |
aattattttgtgattacaagttgagaacaattatcacatggatattttgagaaggatagcaatatagcataacaacaataaataaatgaagggtaaccct |
33559647 |
T |
|
| Q |
201 |
ggcccctagactctaattaaatgaaggtgtaccccacaaaagcatcaaannnnnnncttgttcttcttcatcacaacacatttattataccaaannnnnn |
300 |
Q |
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| T |
33559648 |
ggcccctagactctaattaaatgaaggtgtaccccacaaaagcatcaaatttttttcttgttcttcttcatcacaacacattcattataccaaa----ta |
33559743 |
T |
|
| Q |
301 |
nnnnnnnnnnnnnnnnacacacagagaccaatacacagtacattctaaaaagtctcaaaaacctattgttttttgcaaattgaacactattcccaaaatg |
400 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33559744 |
tctctctctctcacacacacagagagaccaatacacagtacattctaaaaagtctcaaaaacctattgttttttgcaaattgaacactattcccaaaatg |
33559843 |
T |
|
| Q |
401 |
ggtcatgttcaagtaccatcttcttgcattgtacttccttcaacttcttaaattcttcaactttcttcattttcaacaccaccatgttcctctacaaact |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33559844 |
ggtcatgttcaagtaccatcttcttgcattgtacttccttcaacttcttaaattcttcaactttcttcattttcaacaccaccatgttcctctacaaact |
33559943 |
T |
|
| Q |
501 |
tctctttttgttgggtttcttacatattctt |
531 |
Q |
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| T |
33559944 |
tctctttttgttgggtttcttacattttctt |
33559974 |
T |
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