View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2767_high_10 (Length: 491)
Name: NF2767_high_10
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 258 - 475
Target Start/End: Original strand, 37161712 - 37161929
Alignment:
| Q |
258 |
ctatgcgttactcatttagcccctctaaacaatttgttatggttccattgttgtatttaatgcttaatatagaataaatacattaatttttgttgatata |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37161712 |
ctatgcgttactcatttagcccctctaaacaatttgttatggttccatttttgtatttaatgcttaatatagaataaatacattaatttttattgatata |
37161811 |
T |
|
| Q |
358 |
attgttgcttataaaaaatgtctggagcggtttccgtgagcttaactcacttggtaagaacttaatgcatcaattgctgatatattttataccaccttgt |
457 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37161812 |
attgttgcttataaaaaatgactggagcggtttccgtgagcttaactcacttggtaagaacctaatgcatcaattgctgatatattttataccaccttgt |
37161911 |
T |
|
| Q |
458 |
ttttctttgtatcaagtc |
475 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37161912 |
ttttctttgtatcaagtc |
37161929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 37161471 - 37161646
Alignment:
| Q |
17 |
agggtggatgattttattagagatactttaagcatttaaattaggaaaaatattacaaagatatatttactacagaataaatcataatgaattttatgtt |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
37161471 |
agggtggatgattctattagagatactttaagcatttaaattaggaaaaatattacaaagatatatttaccacagaataaatcataatgaattttatttt |
37161570 |
T |
|
| Q |
117 |
aataaaaattgaagaacaacataatcttgacagttgtgtgtttgtatgtcttaacttttggaaaatatatgatact |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37161571 |
aataaaaattgaagaacaacataatcttgacagttgtgtatttgtatgtcttaacttttggaaaatatatgatact |
37161646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 24098036 - 24097965
Alignment:
| Q |
304 |
attgttgtatttaatgcttaatatagaataaatacattaatttttgttgatataattgttgcttataaaaaa |
375 |
Q |
| |
|
|||| ||||||| || | ||||||||| |||||||||||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
24098036 |
attgatgtatttgattcataatatagattaaatacattaaattttgttgacctaattgtttcttataaaaaa |
24097965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University