View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2767_high_11 (Length: 470)

Name: NF2767_high_11
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2767_high_11
NF2767_high_11
[»] chr6 (10 HSPs)
chr6 (16-358)||(26813650-26813992)
chr6 (16-358)||(27216626-27216968)
chr6 (260-358)||(27696494-27696592)
chr6 (249-294)||(26939257-26939302)
chr6 (177-224)||(28245625-28245672)
chr6 (260-358)||(28794568-28794666)
chr6 (260-313)||(25485251-25485304)
chr6 (260-313)||(25513079-25513132)
chr6 (260-313)||(25547172-25547225)
chr6 (260-308)||(26850878-26850926)
[»] chr4 (1 HSPs)
chr4 (251-358)||(5088971-5089078)
[»] scaffold1870 (1 HSPs)
scaffold1870 (260-358)||(975-1073)
[»] scaffold0419 (1 HSPs)
scaffold0419 (260-358)||(9694-9792)
[»] scaffold0277 (1 HSPs)
scaffold0277 (260-358)||(2594-2692)
[»] scaffold0038 (1 HSPs)
scaffold0038 (177-224)||(45787-45834)
[»] chr5 (1 HSPs)
chr5 (251-315)||(16693336-16693400)


Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 26813992 - 26813650
Alignment:
Q  16 caattcttctatgccagtttttctcaaaataatcttcttgatattttccatcttgcccaatatttctggaaatttcttgagacttgtacaaccggaaagt 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26813992 caattcttctatgccagtttttcgcaaaataatcttcttgatattttccatcttgcccaatatttctggaaatttcttgagacttgtacaaccggaaagt 26813893  T
Q  116 ttcaacttacggagagatttcaactttaagggaggaaaactcattagcttgttacaatccgcagcattcaagatttgaagttgacttaggaacccaatag 215  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26813892 ttcaacttacgaagagatttcaactttaagggaggaaaactcaatagcttgttacaatccgcagcattcaagatttgaagttgacttaggaacccaatag 26813793  T
Q  216 aatcatgaactttagttaacctgttgcagtttttgaatgaaattttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaatt 315  Q
    ||||||||| | ||  ||| || ||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||    
T  26813792 aatcatgaattctaactaaactcttgcagtttttaaatgaaattttttctaaatttgggagaaacgagacatctgatatatttgttaagtattcacaatt 26813693  T
Q  316 atcaattttcaaaattttcatcttctcgaacgtctgcataaac 358  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26813692 atcaattttcaaaattttcatcttctcgaacgtctgcataaac 26813650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 27216968 - 27216626
Alignment:
Q  16 caattcttctatgccagtttttctcaaaataatcttcttgatattttccatcttgcccaatatttctggaaatttcttgagacttgtacaaccggaaagt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27216968 caattcttctatgccagtttttctcaaaataatcttcttgatattttccatcttgcccaatatttctggaaatttcttgagacttgtacaaccggaaagt 27216869  T
Q  116 ttcaacttacggagagatttcaactttaagggaggaaaactcattagcttgttacaatccgcagcattcaagatttgaagttgacttaggaacccaatag 215  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27216868 ttcaacttacgaagagatttcaactttaagggaggaaaactcaatagcttgttacaatccgcagcattcaagatttgaagttgacttaggaacccaatag 27216769  T
Q  216 aatcatgaactttagttaacctgttgcagtttttgaatgaaattttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaatt 315  Q
    ||||||||| | ||  ||| || ||||| ||||||||||||||||||||||||||||| ||||||||||| || | ||||| ||||||||||||||||||    
T  27216768 aatcatgaattgtaactaaactcttgcaatttttgaatgaaattttttctaaatttgggagacacgagacgtcgggtatatttgttaagtattcacaatt 27216669  T
Q  316 atcaattttcaaaattttcatcttctcgaacgtctgcataaac 358  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27216668 atcaattttcaaaattttcatcttctcgaacgtctgcataaac 27216626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 27696494 - 27696592
Alignment:
Q  260 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaattatcaattttcaaaattttcatcttctcgaacgtctgcataaac 358  Q
    ||||||||||||| ||| |  |||||||| | |||||||||||| ||||||||||  || | | |||| |||||||| |||| |||| |||||||||||    
T  27696494 ttttctaaatttgaaaggcttgagacatcgggtatatgtgttaaatattcacaatcgtccaatgtcaagattttcatattctggaacttctgcataaac 27696592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 26939302 - 26939257
Alignment:
Q  249 tgaatgaaattttttctaaatttggaagacacgagacatcagatat 294  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||    
T  26939302 tgaatgaaatattttctaaatttggaagacatgagacatctgatat 26939257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 28245672 - 28245625
Alignment:
Q  177 cagcattcaagatttgaagttgacttaggaacccaatagaatcatgaa 224  Q
    ||||||||||||||||||||| | |||||||||||| ||| |||||||    
T  28245672 cagcattcaagatttgaagtttatttaggaacccaacagattcatgaa 28245625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 358
Target Start/End: Complemental strand, 28794666 - 28794568
Alignment:
Q  260 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaattatcaattttcaaaattttcatcttctcgaacgtctgcataaac 358  Q
    ||||| |||||| ||||||  |||||||||| |||||| ||||| |||||||| || || | | |||| | |||||| |||| |||| |||||||||||    
T  28794666 ttttccaaattttgaagacctgagacatcaggtatatgggttaaatattcacacttgtccaatgtcaagactttcatgttctggaacttctgcataaac 28794568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 25485304 - 25485251
Alignment:
Q  260 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaa 313  Q
    ||||||| ||||||||||| ||||||||| | |||||| ||||| |||||||||    
T  25485304 ttttctagatttggaagacccgagacatcgggtatatgggttaaatattcacaa 25485251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 25513132 - 25513079
Alignment:
Q  260 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaa 313  Q
    ||||||| ||||||||||| ||||||||| | |||||| ||||| |||||||||    
T  25513132 ttttctagatttggaagacccgagacatcgggtatatgggttaaatattcacaa 25513079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 25547225 - 25547172
Alignment:
Q  260 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaa 313  Q
    ||||||| |||| |||||| ||||||||||| |||||| ||||| |||||||||    
T  25547225 ttttctagatttcgaagacccgagacatcaggtatatgggttaaatattcacaa 25547172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 26850926 - 26850878
Alignment:
Q  260 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtatt 308  Q
    ||||||||||||||||| |  ||||||||||||||||| ||||| ||||    
T  26850926 ttttctaaatttggaagtccagagacatcagatatatgggttaaatatt 26850878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 358
Target Start/End: Original strand, 5088971 - 5089078
Alignment:
Q  251 aatgaaattttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaattatcaattttcaaaattttcatcttctcgaacgtct 350  Q
    ||||||||||||||||||||||| ||||| ||||| || |   |||   |||| ||||||||||  |||| ||||||||||||||  ||||||||| |||    
T  5088971 aatgaaattttttctaaatttgggagacatgagacgtctggagtatcaattaaatattcacaatagtcaaatttcaaaattttcagattctcgaacttct 5089070  T
Q  351 gcataaac 358  Q
    ||||||||    
T  5089071 gcataaac 5089078  T

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Target: scaffold1870 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 358
Target Start/End: Complemental strand, 1073 - 975
Alignment:
Q  260 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaattatcaattttcaaaattttcatcttctcgaacgtctgcataaac 358  Q
    |||||||||||| ||||||  |||||||||| |||||| ||||| ||||||||  | || | | |||| |||||||| |||| |||| |||||||||||    
T  1073 ttttctaaattttgaagacctgagacatcaggtatatgggttaaatattcacacctgtccaatgtcaagattttcatgttctggaacttctgcataaac 975  T

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Target: scaffold0419 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 358
Target Start/End: Complemental strand, 9792 - 9694
Alignment:
Q  260 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaattatcaattttcaaaattttcatcttctcgaacgtctgcataaac 358  Q
    |||||||||||| ||||||  |||||||||| |||||| ||||| ||||||||  | || | | |||| |||||||| |||| |||| |||||||||||    
T  9792 ttttctaaattttgaagacctgagacatcaggtatatgggttaaatattcacacctgtccaatgtcaagattttcatgttctggaacttctgcataaac 9694  T

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Target: scaffold0277 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 2594 - 2692
Alignment:
Q  260 ttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaattatcaattttcaaaattttcatcttctcgaacgtctgcataaac 358  Q
    |||||||||||| ||||||  |||||||||| |||||| ||||| ||||||||  | || | | |||| |||||||| |||| |||| |||||||||||    
T  2594 ttttctaaattttgaagacctgagacatcaggtatatgggttaaatattcacacctgtccaatgtcaagattttcatgttctggaacttctgcataaac 2692  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 45834 - 45787
Alignment:
Q  177 cagcattcaagatttgaagttgacttaggaacccaatagaatcatgaa 224  Q
    ||||||||||||||||||||| | |||||||||||| ||| |||||||    
T  45834 cagcattcaagatttgaagtttatttaggaacccaacagattcatgaa 45787  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 16693400 - 16693336
Alignment:
Q  251 aatgaaattttttctaaatttggaagacacgagacatcagatatatgtgttaagtattcacaatt 315  Q
    ||||||||||||||||||||||| ||||| || || ||| ||||||| || || |||| ||||||    
T  16693400 aatgaaattttttctaaatttgggagacaagatacgtcaaatatatgcgtcaaatatttacaatt 16693336  T

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