View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2767_high_16 (Length: 423)

Name: NF2767_high_16
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2767_high_16
NF2767_high_16
[»] chr2 (2 HSPs)
chr2 (7-405)||(18253444-18253834)
chr2 (238-405)||(34661494-34661670)
[»] chr3 (4 HSPs)
chr3 (238-405)||(1344395-1344571)
chr3 (238-405)||(31136443-31136619)
chr3 (239-405)||(7578228-7578403)
chr3 (238-398)||(9701131-9701300)
[»] chr8 (2 HSPs)
chr8 (241-405)||(14722986-14723159)
chr8 (239-405)||(12218812-12218988)
[»] chr6 (1 HSPs)
chr6 (238-405)||(7705420-7705596)
[»] chr1 (1 HSPs)
chr1 (238-405)||(48920573-48920749)
[»] chr4 (2 HSPs)
chr4 (238-405)||(55468537-55468713)
chr4 (316-398)||(27189694-27189776)


Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 7 - 405
Target Start/End: Original strand, 18253444 - 18253834
Alignment:
Q  7 tgtattttcctaatatttggtttgnnnnnnngtttgtgcacttctcattttatatttaagcaaacatgtagtaacatcatataattgagtatct--gttt 104  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  18253444 tgtattttcctaatatttggtttgtttttttgtttgtgcacttctcattttatatttaagcaaacatgtagtaacatcatataattgagtatctatgttt 18253543  T
Q  105 caatggtttctttctaaaataaaaaa-tttcaatggtttccttcacnnnnnnnnnnnnngaagttataattgagaccaaaagtttgttatatggtttctg 203  Q
    |||||||||||| |||||| |||||| |||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||    
T  18253544 caatggtttcttcctaaaaaaaaaaagtttcaatggtttccttcacaaaaaaa-------aagttataattgagaccaaaagtttgttatatggtttctg 18253636  T
Q  204 aagattccattgatgtgagcaatctcaatagcagttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaa 303  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  18253637 aagattccattgatgtgagcaatctcaatag---ttccaaccaaaagtttgagaaaccattgatgtgagcaatctcaatagcag-catagtagttactaa 18253732  T
Q  304 ttcagcatataactcccccagatactaggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggttcttt 403  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18253733 ttcaacatataactcccccaaatactaagtaaaacatctaatacacatgctatcagagtttctgaagattcctcatgcagctgctctattagggttcttt 18253832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 238 - 405
Target Start/End: Complemental strand, 34661670 - 34661494
Alignment:
Q  238 ttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatataa---------ctcccccagatac 328  Q
    |||||||||||| ||||||||||||| || |||||| |||||||||||||||||||||| ||||| ||| |||||||          |||||||||||||    
T  34661670 ttccaaccaaaaatttgagaaaccatcgatgtgagctatctcaatagcagtcatagcagctactagttcggcatatagtgcactatgctcccccagatac 34661571  T
Q  329 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggttctttgt 405  Q
    |  ||||| |||| || ||||| ||||||||| |||||||||||||||| ||||||| |||||||||||||||||||    
T  34661570 tgagtaaagcatccaacacataagctatcagaatttctgaagattcctcctgcagctgctctattagggttctttgt 34661494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 238 - 405
Target Start/End: Original strand, 1344395 - 1344571
Alignment:
Q  238 ttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatata---------actcccccagatac 328  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||          ||||||||||||     
T  1344395 ttccaaccaaaaatttgagaaaccattgatgtgagcaatctcaatagccgtcatagcagctactaattcagcatatagtgcatttttctcccccagatat 1344494  T
Q  329 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggttctttgt 405  Q
    |  ||||| |||| |||||||| ||||||| |||||||||||||||||| | ||||| |||||||||||||||||||    
T  1344495 tgagtaaagcatccaatacataagctatcatagtttctgaagattcctcctacagctgctctattagggttctttgt 1344571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 238 - 405
Target Start/End: Complemental strand, 31136619 - 31136443
Alignment:
Q  238 ttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatata---------actcccccagatac 328  Q
    |||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||          |||||||||||||    
T  31136619 ttccaaccaaaaatttgagaaaccattgatgtgagctatctcaatagcagtcatagcagctactaattcagcatatagtgcattttgctcccccagatac 31136520  T
Q  329 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggttctttgt 405  Q
    |  ||||| |||| || ||||| ||||||||| |||||||||||||||| || |||| ||||||| |||||||||||    
T  31136519 tgagtaaagcatccaacacataagctatcagaatttctgaagattcctcctgtagctgctctattggggttctttgt 31136443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 405
Target Start/End: Complemental strand, 7578403 - 7578228
Alignment:
Q  239 tccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatataa---------ctcccccagatact 329  Q
    ||||||||||| ||  |||||||||| | ||||||||||||||| ||||||||||||| ||| | |||| || |||          |||||||||||| |    
T  7578403 tccaaccaaaaattccagaaaccattaatgtgagcaatctcaatggcagtcatagcagctaccagttcaacaaatagagcatcatgctcccccagatatt 7578304  T
Q  330 aggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggttctttgt 405  Q
      || ||||| | |||||||||||||||||||||||||||||| |||| | ||||| |||| ||||||||||||||    
T  7578303 tagtgaaacaaccaatacatatgctatcagagtttctgaagatgcctcctacagctgctctgttagggttctttgt 7578228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 398
Target Start/End: Complemental strand, 9701300 - 9701131
Alignment:
Q  238 ttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatataa---------ctcccccagatac 328  Q
    |||||||||||| ||  |||||||||| | ||||||||||||||| ||| |||||  || ||||| ||||||| |||          ||||||||||||     
T  9701300 ttccaaccaaaaattcaagaaaccattaatgtgagcaatctcaatggcaatcataatagctactagttcagcaaatagagcatcatgctcccccagatat 9701201  T
Q  329 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggt 398  Q
    |  || ||||| | | |||||||||||||| ||||||||||||| |||| |  |||| ||||||||||||    
T  9701200 tgagtgaaacaaccagtacatatgctatcaaagtttctgaagatgcctcctatagctgctctattagggt 9701131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 241 - 405
Target Start/End: Complemental strand, 14723159 - 14722986
Alignment:
Q  241 caaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatataa---------ctcccccagatactag 331  Q
    ||||||||| |||||||||||||||| ||||||||||| |||||| |||||| ||  |||||||||||||||||          ||||||||||||||      
T  14723159 caaccaaaaatttgagaaaccattgatgtgagcaatcttaatagccgtcataacaactactaattcagcatatagtgcattttgctcccccagatactga 14723060  T
Q  332 gtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggttctttgt 405  Q
    ||||| |||| || |||||  ||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  14723059 gtaaagcatccaacacataaactatcagagtttctgaagattcctcctgcagctgctctattagggttctttgt 14722986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 239 - 405
Target Start/End: Original strand, 12218812 - 12218988
Alignment:
Q  239 tccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatataa---------ctccccc-agatac 328  Q
    ||||||||||| ||  |||||||||| | ||||||||||||||| ||||||||||||| ||| | ||||||| |||          ||||||| |||||     
T  12218812 tccaaccaaaaattccagaaaccattaatgtgagcaatctcaatggcagtcatagcagctaccagttcagcaaatagagcatcatgctccccccagatat 12218911  T
Q  329 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggttctttgt 405  Q
    |  || ||||| | |||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||    
T  12218912 ttagtgaaacaaccaatacatatgctatcagagtttctgaagatgcctcctacagctgctctattagggttctttgt 12218988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 238 - 405
Target Start/End: Complemental strand, 7705596 - 7705420
Alignment:
Q  238 ttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatataa---------ctcccccagatac 328  Q
    ||||||| |||| || ||||||||||||| |||||| ||||||||||||| |||||||| |||||||| ||||||||          |||||||||||||    
T  7705596 ttccaactaaaaattagagaaaccattgatgtgagctatctcaatagcagacatagcagctactaatttagcatatattgcattttgctcccccagatac 7705497  T
Q  329 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggttctttgt 405  Q
    |  ||||| |||| || ||||| ||||||||| |||||||||||||||| ||||||| ||||||| |||||||||||    
T  7705496 tgagtaaagcatccaacacataagctatcagaatttctgaagattcctcctgcagctgctctattggggttctttgt 7705420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 238 - 405
Target Start/End: Complemental strand, 48920749 - 48920573
Alignment:
Q  238 ttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatata---------actcccccagatac 328  Q
    |||||||||||| |||||||||||||||| |||||  || ||||||||||||||||||| ||||| ||| |||||||          |||||||||||||    
T  48920749 ttccaaccaaaaatttgagaaaccattgatgtgagttatttcaatagcagtcatagcagctactagttcggcatatagtgcattatgctcccccagatac 48920650  T
Q  329 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggttctttgt 405  Q
    |  ||||| |||| || |||||  |||||||| ||||| |||||||||| ||||||| ||||||| |||||||||||    
T  48920649 tgagtaaagcatccaacacataatctatcagaatttctaaagattcctcctgcagctgctctattggggttctttgt 48920573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 238 - 405
Target Start/End: Complemental strand, 55468713 - 55468537
Alignment:
Q  238 ttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatataa---------ctcccccagatac 328  Q
    |||||||||||| ||  |||||||||| | ||||||||||||||| ||||||||||||| ||||| ||||||| |||          ||||||||||||     
T  55468713 ttccaaccaaaaattcaagaaaccattaatgtgagcaatctcaatggcagtcatagcagctactagttcagcaaatagagcatcatgctcccccagatat 55468614  T
Q  329 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggttctttgt 405  Q
    || || ||||| | |||||||||| |||| |||||||||||||| |||| | ||||| |||| ||||||||||||||    
T  55468613 taagtgaaacaaccaatacatatgatatctgagtttctgaagatgcctcctacagctgctctgttagggttctttgt 55468537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 398
Target Start/End: Complemental strand, 27189776 - 27189694
Alignment:
Q  316 ctcccccagatactaggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggt 398  Q
    |||||||||||| |  || ||||| | | |||||||||||||| ||||||||||||| |||| |  |||| ||||||||||||    
T  27189776 ctcccccagatattgagtgaaacaaccagtacatatgctatcaaagtttctgaagatgcctcctatagctgctctattagggt 27189694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University