View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_high_17 (Length: 391)
Name: NF2767_high_17
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 9114646 - 9114281
Alignment:
| Q |
17 |
agcaattaacattgtgttcaagatatcagagaaacagtgaaaggcatacataattactactaccaatgttcaaagagacatcatactaataatagagttt |
116 |
Q |
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| T |
9114646 |
agcaattaacattgtgttcaagatatcagagaaacagtgaaaggcatacataattactactaccaatgttcaaagagacatcatactaataatagagttt |
9114547 |
T |
|
| Q |
117 |
tgaaatcatagataccaacccatttagttcacaaacattagggtatgaatctcataaataagcctaaaaaa-ttacacaaacaattacataaacttcaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9114546 |
tgaaatcatagataccaacccatttagttcacaaacattagggtatgaatctcataaataagcctaaaaaaattacacaaacaattacataaacttcaac |
9114447 |
T |
|
| Q |
216 |
ataaaagttaccaccaaccaatcaccttaagaaatttcaacatttaataattagccacttatcaacatctccaagttgaaactgagatgagttctttcct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9114446 |
ataaaagttaccaccaaccaatcaccttaagaaatttcaacatttaataattagccacttatcaacatctccaagttgaaactgagatgagttctttcct |
9114347 |
T |
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| Q |
316 |
ctgccagcatagcataagagaggaaggctttctttccacttgaaatcctctcacaggtgccctttg |
381 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9114346 |
ctgccagcatagcacaagagaggaaggctttctttccacttgaaatcctctcacaggtgccctttg |
9114281 |
T |
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