View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2767_high_19 (Length: 377)
Name: NF2767_high_19
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 35904927 - 35905135
Alignment:
| Q |
19 |
cacagacccatcataaagactcaactcatcatccttaggaaactctccacatgaaactttgtacatgtcccatgtctcattttcttcctccaacattttc |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35904927 |
cacaaacccatcataaagactcaactcatcatccttaggaaactctccacatgaaactttgtacatgtcccatgtctcattttcttcctccaacattttc |
35905026 |
T |
|
| Q |
119 |
aagaatacaccagaataccctccatgcatctttatcacatactctgaatcctctgcacataacaacgcaccaaatctcttgcaaccaattttctccatta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35905027 |
aagaatacaccagaataccctccatgcatctttatcacatactctgaatcctctgcacataacaacacaccaaatctcttgcaaccaattttctccatta |
35905126 |
T |
|
| Q |
219 |
tcaagtagt |
227 |
Q |
| |
|
||||||||| |
|
|
| T |
35905127 |
tcaagtagt |
35905135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 267 - 362
Target Start/End: Original strand, 35905170 - 35905265
Alignment:
| Q |
267 |
gaaattctagagagagaaagtgaagatgagaggaactctttctgcttgtagtttgcatgaaagtgacaatgttggtgatttttataggactgatgt |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35905170 |
gaaattctagagagagaaagtgaagatgagaggaactctttctgcttgtagtttgcatgaaagtgacaatgttggtgatttttataggactgatgt |
35905265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 33618107 - 33618002
Alignment:
| Q |
19 |
cacagacccatcataaagactcaactcatcatccttaggaaactctccacatgaaactttgtacatg-----tcccatgtctcattttcttcctccaaca |
113 |
Q |
| |
|
|||| |||||||||| |||||||| ||||||||||||| |||||||| || |||||| |||| |||| | ||||||||| |||||||||||||||| |
|
|
| T |
33618107 |
cacaaacccatcatagagactcaattcatcatccttagaaaactctcaacgtgaaacgttgtgcatgttccattccatgtctccttttcttcctccaaca |
33618008 |
T |
|
| Q |
114 |
ttttca |
119 |
Q |
| |
|
|||||| |
|
|
| T |
33618007 |
ttttca |
33618002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 43725408 - 43725251
Alignment:
| Q |
26 |
ccatcataaagactcaactcatcatcctta-ggaaactctccacatgaaacttt-gtacatgtcccatgtctcattttcttcctccaacattttcaagaa |
123 |
Q |
| |
|
|||||||| |||||||| ||| |||| ||| ||||||||||||| ||||||||| ||||||| || ||||||| |||||||| |||| |||||| ||| |
|
|
| T |
43725408 |
ccatcatagagactcaattcaccatctttaaggaaactctccacgtgaaacttttgtacatgacctatgtctccttttcttcatcca---ttttcaggaa |
43725312 |
T |
|
| Q |
124 |
tacaccagaataccctccatgcatctttatcacatactctgaatcctctgcacataacaac |
184 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
43725311 |
caccccaaaataccctccatacatctttatcacatgctctgaatcctctgcacacaacaac |
43725251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 1585625 - 1585579
Alignment:
| Q |
267 |
gaaattctagagagagaaagtgaagatgagaggaactctttctgctt |
313 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1585625 |
gaaattctagagagagaaagtgaaaatgagaggaactctttctgctt |
1585579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 37023124 - 37023026
Alignment:
| Q |
100 |
ttcttcctccaacattttcaagaatacaccagaataccctccatgcatctttatcacatactctgaatcctctgcacataacaacgcaccaaatctctt |
198 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||| |||||||||| | ||| || ||||||| |||||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
37023124 |
ttcttcctccaacattctcacaaataccccaaaataccctccgtacattttcttcacatattctgaatcatctgcacataacaacaccccaaatctctt |
37023026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 44831261 - 44831327
Alignment:
| Q |
19 |
cacagacccatcataaagactcaactcatcatccttaggaaactctccacatgaaactttgtacatg |
85 |
Q |
| |
|
|||| |||||||||| |||||||| ||||||||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
44831261 |
cacaaacccatcatatagactcaatacatcatccttaaaaaactctccacgtgaaacattgtacatg |
44831327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University