View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_high_20 (Length: 370)
Name: NF2767_high_20
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 35086410 - 35086071
Alignment:
| Q |
19 |
tttttaaaaaagtcgtttaacaacgataagaactaataactagtaattcttaagaaacaagatagtaacgttgaaagaaaacacaaaaatgaatttccat |
118 |
Q |
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| T |
35086410 |
tttttaaaaaagtcgtttaacaacgataagaactaataactagtaattcttaacaaaaaagatagtaacgttgaaagaaaacacgaaaatgaatttccat |
35086311 |
T |
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| Q |
119 |
aatacaataaataagactcaaaacattgaccacactttaaataaacctacaaaatataacaacattctttagctattttacatgaactcggtaattgtaa |
218 |
Q |
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| T |
35086310 |
aatacaaaaaataagactcaaaacattgaccacactttaaataaacctccaaaatataacaacattctttagctattttacatgaactcggtaattgtaa |
35086211 |
T |
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| Q |
219 |
cctgtttcatggcattaatctcttggcatgtgaacaagattgaatgtaatgaagtcaaatttccatggattagctccaagaggtgtgtgaaactcagtac |
318 |
Q |
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| T |
35086210 |
cctgtttcatggcattattctcttggcatgtgaacaagattgaatgtaatgaagtcaaatttccatggattagctccaagaggtgtgtgaaactcagtac |
35086111 |
T |
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| Q |
319 |
ttcctcctttcttttgcgcgcttacgagtactcttacctt |
358 |
Q |
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| T |
35086110 |
ttcctcctttcttttgcacgcttacgagtactcttacctt |
35086071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 105 - 255
Target Start/End: Original strand, 27689975 - 27690114
Alignment:
| Q |
105 |
aaatgaatttccataatacaataaataagactcaaaacattgaccacactttaaataaacctacaaaatataacaacattctttagctattttacatgaa |
204 |
Q |
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| T |
27689975 |
aaatgaatttccataatacaaaaaataagactcaa--cattgaccaca---------aacgtacaaaatataacaacattctttagttattttacatgaa |
27690063 |
T |
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| Q |
205 |
ctcggtaattgtaacctgtttcatggcattaatctcttggcatgtgaacaa |
255 |
Q |
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| T |
27690064 |
ctctgtaattgtaacctgtttcatagcattaatttattggcatgtgaacaa |
27690114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 27690126 - 27690182
Alignment:
| Q |
299 |
aggtgtgtgaaactcagtacttcctcctttcttttgcgcgcttacgagtactcttac |
355 |
Q |
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| T |
27690126 |
aggtgtgtgaaactcagtacttcctcctttcttttgcgcgtttacgagtactcttac |
27690182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 34578623 - 34578578
Alignment:
| Q |
104 |
aaaatgaatttccataatacaataaataagactcaaaacattgacca |
150 |
Q |
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| T |
34578623 |
aaaatgaatttccataatacaataaataagactctaaa-attgacca |
34578578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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